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STRUCTURE OF FACTOR H DOMAINS 19-20 IN COMPLEX WITH COMPLEMENT C3D
Biology and Chemistry Report
2XQW
  •   Structure Details   Hide

    Structure Keywords

    Keywords IMMUNE SYSTEM
    Text IMMUNE SYSTEM, COMPLEMENT ALTERNATIVE PATHWAY, ATYPICAL HEMOLYTIC UREMIC SYNDROME, AHUS, CFH, FH, C3B

    Polymeric Molecules

    Chain A,B
    Description COMPLEMENT C3 
    Fragment THIOESTER DOMAIN, RESIDUES 996-1287 
    Mutation YES 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 32899.0 
    Source Method genetically manipulated  
    Entity Name C3 AND PZP-LIKE ALPHA-2-MACROGLOBULIN DOMAIN-CONTAINING PROTEIN 1 
    Chain C
    Description COMPLEMENT FACTOR H 
    Fragment DOMAINS 19-20, RESIDUES 1103-1231 
    Mutation YES 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14984.2 
    Source Method genetically manipulated  
    Entity Name H FACTOR 1 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B CO3_HUMAN P01024     
    C CFAH_HUMAN A5PL14     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    5615   Extracellular Space  That Part of a Multicellular Organism Outside the Cells Proper Usually Taken to Be Outside the Plasma Membranes and Occupied by Fluid. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain C
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Pichia pastoris  


    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Pet15
    Host Vector Type Plasmid


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q32 3075     complement factor H CFH    
    19 19p13.3-p13.2 718     complement component 3 C3    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs148698696 LS-SNP   dbSNP   A 39 E - > D Turn 89% (Exposed) 19 6694500
    rs146026441 LS-SNP   dbSNP   A 51 G - > R Helix 45% (Exposed) 19 6694466
    rs142393845 LS-SNP   dbSNP   A 67 R - > S Beta 34% (Intermediate) 19 6693473
    rs149259834 LS-SNP   dbSNP   A 93 F - > L Helix 1% (Buried) 19 6693067
    rs145346653 LS-SNP   dbSNP   A 93 F - > L Helix 1% (Buried) 19 6693069
    rs121909584 LS-SNP   dbSNP   A 101 A - > V Coil 89% (Exposed) 19 6693044
    rs121909585 LS-SNP   dbSNP   A 122 D - > N Turn 20% (Intermediate) 19 6692982
    rs138900723 LS-SNP   dbSNP   A 141 R - > W Bend 43% (Exposed) 19 6690729
    rs150237828 LS-SNP   dbSNP   A 151 T - > M Helix 0% (Buried) 19 6690698
    rs201865666 LS-SNP   dbSNP   A 161 A - > T Turn 0% (Buried) 19 6690669
    rs141031839 LS-SNP   dbSNP   A 183 L - > I Helix 0% (Buried) 19 6686877
    rs11569534 LS-SNP   dbSNP   A 231 G - > D Bend 75% (Exposed) 19 6686274
    rs147113695 LS-SNP   dbSNP   A 237 V - > M Helix 4% (Buried) 19 6686257
    rs149007163 LS-SNP   dbSNP   A 258 P - > L Helix 26% (Intermediate) 19 6686193
    rs147866119 LS-SNP   dbSNP   A 261 R - > H Helix 60% (Exposed) 19 6686184
    rs112747284 LS-SNP   dbSNP   A 274 G - > CR Turn 10% (Intermediate) 19 6686146
    rs201538141 LS-SNP   dbSNP   C 1110 G - > A Coil 38% (Exposed) 1 196714965
    rs138609319 LS-SNP   dbSNP   C 1114 P - > L Coil 63% (Exposed) 1 196714977
    rs145288883 LS-SNP   dbSNP   C 1120 I - > F Beta Ladder 9% (Buried) 1 196714994
    rs75607234 LS-SNP   dbSNP   C 1134 V - > A Beta Ladder 3% (Buried) 1 196715037
    rs15809 LS-SNP   dbSNP   C 1143 Q - > E Beta Ladder 37% (Exposed) 1 196715063
    rs201349586 LS-SNP   dbSNP   C 1148 K - > R Bend 24% (Intermediate) 1 196715079
    rs121913055 LS-SNP   dbSNP   C 1189 L - > R Beta Ladder 30% (Intermediate) 1 196716313
    rs460897 LS-SNP   dbSNP   C 1191 S - > L Beta Ladder 3% (Buried) 1 196716319
    rs460184 LS-SNP   dbSNP   C 1197 V - > A Beta Ladder 4% (Buried) 1 196716337
    rs147478315 LS-SNP   dbSNP   C 1202 K - > N Coil 9% (Buried) 1 196716353
    rs145347741 LS-SNP   dbSNP   C 1203 R - > W Turn 26% (Intermediate) 1 196716354
    rs28929497 LS-SNP   dbSNP   C 1207 L - > R Coil 34% (Intermediate) 1 196716367
    rs121913059 LS-SNP   dbSNP   C 1210 R - > C Turn 40% (Exposed) 1 196716375
    rs121913051 LS-SNP   dbSNP   C 1215 R - > G Beta Ladder 53% (Exposed) 1 196716390