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LIGAND BINDING DOMAIN OF HUMAN PPAR-GAMMA IN COMPLEX WITH THE AGONIST PIOGLITAZONE
Biology and Chemistry Report
2XKW
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSCRIPTION
    Text TRANSCRIPTION, NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, GENE REGULATION, THIAZOLIDINEDIONE

    Polymeric Molecules

    Chain A,B
    Description PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA 
    Fragment LIGAND BINDING DOMAIN, RESIDUES 204-477 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 31321.7 
    Source Method genetically manipulated  
    Entity Name PPAR-GAMMA, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    EPE  4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID  C8 H18 N2 O4 S   238.31  View 
    P1B  (5R)-5-{4-[2-(5-ethylpyridin-2-yl)ethoxy]benzyl}-1,3-thiazolidine-2,4-dione  C19 H20 N2 O3 S   356.44  View 
    PE4  2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL  C16 H34 O8   354.44  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B PPARG_HUMAN A8K3G6     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name PET-28A


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    3 3p25 5468     peroxisome proliferator-activated receptor gamma PPARG    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs150296212 LS-SNP   dbSNP   A 212 R - > Q Helix 35% (Intermediate) 3 12447480
    rs76480583 LS-SNP   dbSNP   A 238 T - > K Helix 61% (Exposed) 3 12447558
    rs200116144 LS-SNP   dbSNP   A 246 P - > L Coil 24% (Intermediate) 3 12458204
    rs147996578 LS-SNP   dbSNP   A 248 V - > I Beta Ladder 42% (Exposed) 3 12458209
    rs111400984 LS-SNP   dbSNP   A 281 I - > T Helix 12% (Intermediate) 3 12458309 P1B
    rs121909242 LS-SNP   dbSNP   A 286 Q - > P Helix 8% (Buried) 3 12458324 P1B
    rs28936407 LS-SNP   dbSNP   A 288 R - > H Helix 37% (Exposed) 3 12458330
    rs72551362 LS-SNP   dbSNP   A 290 V - > M Helix 6% (Buried) 3 12458335
    rs139894525 LS-SNP   dbSNP   A 307 V - > L 3/10 Helix 49% (Exposed) 3 12458386
    rs145566594 LS-SNP   dbSNP   A 328 T - > P Helix 0% (Buried) 3 12458449
    rs141683496 LS-SNP   dbSNP   A 343 E - > K Turn 59% (Exposed) 3 12458494
    rs140204299 LS-SNP   dbSNP   A 357 R - > Q Coil 27% (Intermediate) 3 12458537
    rs188622140 LS-SNP   dbSNP   A 360 F - > C Turn 0% (Buried) 3 12458546
    rs72551363 LS-SNP   dbSNP   A 360 F - > L Turn 0% (Buried) 3 12458547
    rs148844673 LS-SNP   dbSNP   A 382 S - > R Helix 17% (Intermediate) 3 12458613
    rs72551364 LS-SNP   dbSNP   A 397 R - > C Bend 3% (Buried) 3 12475399
    rs186728157 LS-SNP   dbSNP   A 427 E - > A Turn 74% (Exposed) 3 12475490
    rs62243567 LS-SNP   dbSNP   A 449 H - > N Helix 9% (Intermediate) 3 12475555 P1B
    rs201781800 LS-SNP   dbSNP   A 459 T - > M Helix 52% (Exposed) 3 12475586
    rs121909244 LS-SNP   dbSNP   A 467 P - > L Helix 63% (Exposed) 3 12475610