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An Information Portal to 105339 Biological Macromolecular Structures

PROTEIN KINASE PIM-1 IN COMPLEX WITH FRAGMENT-1 FROM CRYSTALLOGRAPHIC FRAGMENT SCREEN
Biology and Chemistry Report
2XIX
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text ATP-BINDING, PHOSPHORYLATION, TRANSFERASE

    Polymeric Molecules

    Chain A
    Description PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE PIM-1 
    Fragment KINASE DOMAIN, RESIDUES 14-313 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 34469.2 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    XIX  3,5-DIAMINO-1H-[1,2,4]TRIAZOLE  C2 H5 N5   99.10  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A PIM1_HUMAN P11309     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.11.1      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4674   Protein Serine/threonine Kinase Activity  Catalysis of the Reactions: ATP + Protein Serine = Adp + Protein Serine Phosphate and ATP + Protein Threonine = Adp + Protein Threonine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Plasmid Name PET30A, HIS-TEV-PIM-1(14-313)


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    6 6p21.2 5292     Pim-1 proto-oncogene, serine/threonine kinase PIM1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs149210226 LS-SNP   dbSNP   A 82 N - > D Turn 77% (Exposed) 6 37138904
    rs35760989 LS-SNP   dbSNP   A 124 E - > Q Bend 64% (Exposed) 6 37139030
    rs200523275 LS-SNP   dbSNP   A 135 E - > K Helix 70% (Exposed) 6 37139063
    rs33989191 LS-SNP   dbSNP   A 142 E - > D Helix 40% (Exposed) 6 37139086
    rs141143854 LS-SNP   dbSNP   A 157 H - > Y Helix 17% (Intermediate) 6 37139129
    rs200536541 LS-SNP   dbSNP   A 157 H - > P Helix 17% (Intermediate) 6 37139130
    rs200495767 LS-SNP   dbSNP   A 184 L - > V Beta Ladder 2% (Buried) 6 37139210
    rs137884665 LS-SNP   dbSNP   A 197 V - > F Coil 25% (Intermediate) 6 37139249
    rs199791472 LS-SNP   dbSNP   A 206 V - > E 3/10 Helix 24% (Intermediate) 6 37140781
    rs141695323 LS-SNP   dbSNP   A 282 E - > V Helix 71% (Exposed) 6 37141770
    rs9349029 LS-SNP   dbSNP   A 300 A - > V Helix 0% (Buried) 6 37141824
    rs199624946 LS-SNP   dbSNP   A 302 I - > T Helix 56% (Exposed) 6 37141830