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G93A SOD1 MUTANT COMPLEXED WITH QUINAZOLINE.
Biology and Chemistry Report
2WZ6
  •   Structure Details   Hide

    Structure Keywords

    Keywords OXIDOREDUCTASE
    Text OXIDOREDUCTASE, DISEASE MUTATION, NEURODEGENERATION, AMYOTROPHIC LATERAL SCLEROSIS, METAL-BINDING, ANTIOXIDANT

    Polymeric Molecules

    Chain A,F
    Description SUPEROXIDE DISMUTASE [CU-ZN] 
    Mutation YES 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 15841.7 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CU  COPPER (II) ION  Cu   63.55  View 
    SO4  SULFATE ION  O4 S   96.06  View 
    ZN  ZINC ION  Zn   65.41  View 
    ZO0  4-(4-METHYL-1,4-DIAZEPAN-1-YL)-2-(TRIFLUOROMETHYL)QUINAZOLINE  C15 H17 F3 N4   310.32  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,F SODC_HUMAN A6NHJ0     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A F  1.15.1.1      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,F
    GO ID   Ontology GO Term Definition
    187   Activation of Mapk Activity  The Initiation of the Activity of the Inactive Enzyme Map Kinase (mapk). 
    1541   Ovarian Follicle Development  The Process Whose Specific Outcome Is the Progression of the Ovarian Follicle Over Time From Its Formation to the Mature Structure. 
    1895   Retina Homeostasis  A Tissue Homeostatic Process Involved in the Maintenance of an Internal Equilibrium Within the Retina of the Eye Including Control of Cellular Proliferation and Death and Control of Metabolic Function. 
    2262   Myeloid Cell Homeostasis  The Process of Regulating the Proliferation and Elimination of Myeloid Cells Such That the Total Number of Myeloid Cells Within a Whole or Part of an Organism Is Stable Over Time in the Absence of an Outside Stimulus. 
    6749   Glutathione Metabolic Process  The Chemical Reactions and Pathways Involving Glutathione the Tripeptide Glutamylcysteinylglycine Which Acts As a Coenzyme For Some Enzymes and As an Antioxidant in the Protection of Sulfhydryl Groups in Enzymes and Other Proteins; It Has a Specific Role in the Reduction of Hydrogen Peroxide (h2o2) and Oxidized Ascorbate and It Participates in the Gamma Glutamyl Cycle. 
    6801   Superoxide Metabolic Process  The Chemical Reactions and Pathways Involving Superoxide the Superoxide Anion O2 (superoxide Free Radical) or Any Compound Containing This Species. 
    6879   Cellular Iron Ion Homeostasis  Any Process Involved in the Maintenance of an Internal Steady State of Iron Ions At the Level of a Cell. 
    7283   Spermatogenesis  The Process of Formation of Spermatozoa Including Spermatocytogenesis and Spermiogenesis. 
    7566   Embryo Implantation  Attachment of the Blastocyst to the Uterine Lining. 
    7605   Sensory Perception of Sound  The Series of Events Required For an Organism to Receive an Auditory Stimulus Convert It to a Molecular Signal and Recognize and Characterize the Signal. Sonic Stimuli Are Detected in the Form of Vibrations and Are Processed to Form a Sound. 
    7626   Locomotory Behavior  The Specific Movement From Place to Place of an Organism in Response to External or Internal Stimuli. Locomotion of a Whole Organism in a Manner Dependent Upon Some Combination of That Organism's Internal State and External Conditions. 
    8089   Anterograde Axon Cargo Transport  The Directed Movement of Organelles or Molecules Along Microtubules From the Cell Body Toward the Cell Periphery in Nerve Cell Axons. 
    8090   Retrograde Axon Cargo Transport  The Directed Movement of Organelles or Molecules Along Microtubules From the Cell Periphery Toward the Cell Body in Nerve Cell Axons. 
    8217   Regulation of Blood Pressure  Any Process That Modulates the Force with Which Blood Travels Through the Circulatory System. the Process Is Controlled by a Balance of Processes That Increase Pressure and Decrease Pressure. 
    8219   Cell Death  Any Biological Process That Results in Permanent Cessation of All Vital Functions of a Cell. a Cell Should Be Considered Dead When Any One of the Following Molecular or Morphological Criteria Is Met: (1) the Cell Has Lost the Integrity of Its Plasma Membrane; (2) the Cell Including Its Nucleus Has Undergone Complete Fragmentation Into Discrete Bodies (frequently Referred to As "apoptotic Bodies"); And/or (3) Its Corpse (or Its Fragments) Have Been Engulfed by an Adjacent Cell in Vivo. 
    9408   Response to Heat  Any Process That Results in a Change in State or Activity of a Cell or an Organism (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of a Heat Stimulus a Temperature Stimulus Above the Optimal Temperature For That Organism. 
    19226   Transmission of Nerve Impulse  The Neurological System Process in Which a Signal Is Transmitted Through the Nervous System by Synaptic Transmission and the Sequential Electrochemical Polarization and Depolarization That Travels Across the Membrane of a Nerve Cell (neuron) in Response to Stimulation. 
    19430   Removal of Superoxide Radicals  Any Process Involved in Removing Superoxide Radicals (o2 ) From a Cell or Organism E.g. by Conversion to Dioxygen (o2) and Hydrogen Peroxide (h2o2). 
    32287   Peripheral Nervous System Myelin Maintenance  The Process in Which the Structure and Material Content of Mature Peripheral Nervous System Myelin Is Kept in a Functional State. 
    40014   Regulation of Multicellular Organism Growth  Any Process That Modulates the Frequency Rate or Extent of Growth of the Body of an Organism So That It Reaches Its Usual Body Size. 
    42493   Response to Drug  Any Process That Results in a Change in State or Activity of a Cell or an Organism (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of a Drug Stimulus. a Drug Is a Substance Used in the Diagnosis Treatment or Prevention of a Disease. 
    42542   Response to Hydrogen Peroxide  Any Process That Results in a Change in State or Activity of a Cell or an Organism (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of a Hydrogen Peroxide (h2o2) Stimulus. 
    43524   Negative Regulation of Neuron Apoptotic Process  Any Process That Stops Prevents or Reduces the Frequency Rate or Extent of Cell Death by Apoptotic Process in Neurons. 
    45471   Response to Ethanol  Any Process That Results in a Change in State or Activity of a Cell or an Organism (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of an Ethanol Stimulus. 
    46716   Muscle Cell Cellular Homeostasis  The Cellular Homeostatic Process That Preserves a Muscle Cell in a Stable Functional or Structural State. 
    48678   Response to Axon Injury  Any Process That Results in a Change in State or Activity of a Cell or an Organism (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of an Axon Injury Stimulus. 
    50665   Hydrogen Peroxide Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Hydrogen Peroxide (h2o2) a Potentially Harmful Byproduct of Aerobic Cellular Respiration Which Can Cause Damage to Dna. 
    55114   Oxidation Reduction Process  A Metabolic Process That Results in the Removal or Addition of One or More Electrons to or From a Substance with or Without the Concomitant Removal or Addition of a Proton or Protons. 
    60052   Neurofilament Cytoskeleton Organization  A Process That Is Carried Out At the Cellular Level Which Results in the Assembly Arrangement of Constituent Parts or Disassembly of Cytoskeletal Structures Comprising Neurofilaments and Their Associated Proteins. 
    60087   Relaxation of Vascular Smooth Muscle  A Process in Which the Extent of Vascular Smooth Muscle Contraction Is Reduced. Vascular Smooth Muscle Relaxation Is Mediated Via a Decrease in the Phosphorylation State of Myosin Light Chain. This Can Be Achieved by Removal of Calcium From the Cytoplasm to the Sarcoplasmic Reticulum Lumen Through the Action of Ca2+ Atpases Leading to a Decrease Myosin Light Chain Kinase Activity and Through Calcium Independent Pathways Leading to a Increase in Myosin Light Chain Phosphatase Activity. 
    60088   Auditory Receptor Cell Stereocilium Organization  A Process That Is Carried Out At the Cellular Level Which Results in the Assembly Arrangement of Constituent Parts or Disassembly of a Stereocilium. a Stereocilium Is an Actin Based Protrusion From the Apical Surface of Auditory Hair Cells. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    5777   Peroxisome  A Small Organelle Enclosed by a Single Membrane and Found in Most Eukaryotic Cells. Contains Peroxidases and Other Enzymes Involved in a Variety of Metabolic Processes Including Free Radical Detoxification Lipid Catabolism and Biosynthesis and Hydrogen Peroxide Metabolism. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    16209   Antioxidant Activity  Inhibition of the Reactions Brought About by Dioxygen (o2) or Peroxides. Usually the Antioxidant Is Effective Because It Can Itself Be More Easily Oxidized Than the Substance Protected. the Term Is Often Applied to Components That Can Trap Free Radicals Thereby Breaking the Chain Reaction That Normally Leads to Extensive Biological Damage. 
    16491   Oxidoreductase Activity  Catalysis of an Oxidation Reduction (redox) Reaction a Reversible Chemical Reaction in Which the Oxidation State of an Atom or Atoms Within a Molecule Is Altered. One Substrate Acts As a Hydrogen or Electron Donor and Becomes Oxidized While the Other Acts As Hydrogen or Electron Acceptor and Becomes Reduced. 
    42802   Identical Protein Binding  Interacting Selectively and Non Covalently with an Identical Protein or Proteins. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 
    51087   Chaperone Binding  Interacting Selectively and Non Covalently with a Chaperone Protein a Class of Proteins That Bind to Nascent or Unfolded Polypeptides and Ensure Correct Folding or Transport. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,F
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Saccharomyces cerevisiae  


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    21 21q22.11 6647     superoxide dismutase 1, soluble SOD1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs121912444 LS-SNP   dbSNP   A 4 A - > T Beta Ladder 2% (Buried) 21 33032095
    rs121912442 LS-SNP   dbSNP   A 4 A - > V Beta Ladder 2% (Buried) 21 33032096
    rs121912448 LS-SNP   dbSNP   A 6 C - > F Beta Ladder 1% (Buried) 21 33032102
    rs121912456 LS-SNP   dbSNP   A 12 G - > R Turn 85% (Exposed) 21 33032119
    rs200016533 LS-SNP   dbSNP   A 15 Q - > R Beta Ladder 35% (Intermediate) 21 33032129
    rs121912453 LS-SNP   dbSNP   A 16 G - > S Beta Ladder 6% (Buried) 21 33032131
    rs121912450 LS-SNP   dbSNP   A 21 E - > K Beta Ladder 23% (Intermediate) 21 33032146 ZO0
    rs11556621 LS-SNP   dbSNP   A 28 P - > Q Coil 36% (Exposed) 21 33036116
    rs121912431 LS-SNP   dbSNP   A 37 G - > R Bend 46% (Exposed) 21 33036142
    rs121912432 LS-SNP   dbSNP   A 38 L - > V Coil 3% (Buried) 21 33036145
    rs1804450 LS-SNP   dbSNP   A 39 T - > I Coil 70% (Exposed) 21 33036149
    rs121912434 LS-SNP   dbSNP   A 41 G - > D Beta Ladder 29% (Intermediate) 21 33036155
    rs121912433 LS-SNP   dbSNP   A 41 G - > S Beta Ladder 29% (Intermediate) 21 33036154
    rs121912435 LS-SNP   dbSNP   A 43 H - > R Beta Ladder 1% (Buried) 21 33036161
    rs121912457 LS-SNP   dbSNP   A 45 F - > C Beta Ladder 0% (Buried) 21 33036167
    rs121912443 LS-SNP   dbSNP   A 46 H - > R Beta Ladder 0% (Buried) 21 33036170 CU,ZN
    rs121912455 LS-SNP   dbSNP   A 72 G - > S Coil 0% (Buried) 21 33038809 ZN
    rs121912458 LS-SNP   dbSNP   A 80 H - > R Coil 8% (Buried) 21 33039573 ZN
    rs121912452 LS-SNP   dbSNP   A 84 L - > V Beta Ladder 2% (Buried) 21 33039584
    rs121912436 LS-SNP   dbSNP   A 85 G - > R Beta Ladder 4% (Buried) 21 33039587
    rs11556620 LS-SNP   dbSNP   A 86 N - > S Beta Ladder 24% (Intermediate) 21 33039591
    rs80265967 LS-SNP   dbSNP   A 90 D - > A Coil 55% (Exposed) 21 33039603
    rs121912437 LS-SNP   dbSNP   A 93 G - > C Bend 29% (Intermediate) 21 33039611
    rs121912438 LS-SNP   dbSNP   A 93 G - > A Bend 29% (Intermediate) 21 33039612
    rs121912460 LS-SNP   dbSNP   A 93 G - > R Bend 29% (Intermediate) 21 33039611
    rs202198235 LS-SNP   dbSNP   A 94 V - > A Beta Ladder 25% (Intermediate) 21 33039615
    rs121912459 LS-SNP   dbSNP   A 96 D - > N Beta Ladder 79% (Exposed) 21 33039620
    rs111229903 LS-SNP   dbSNP   A 96 D - > E Beta Ladder 79% (Exposed) 21 33039622
    rs121912439 LS-SNP   dbSNP   A 100 E - > G Beta Ladder 60% (Exposed) 21 33039633 ZO0
    rs121912445 LS-SNP   dbSNP   A 104 I - > F Coil 2% (Buried) 21 33039644
    rs121912440 LS-SNP   dbSNP   A 106 L - > V Bend 4% (Buried) 21 33039650
    rs74315452 LS-SNP   dbSNP   A 112 I - > T Coil 0% (Buried) 21 33039669
    rs121912441 LS-SNP   dbSNP   A 113 I - > T Turn 11% (Intermediate) 21 33039672
    rs199474723 LS-SNP   dbSNP   A 117 L - > V Beta Ladder 0% (Buried) 21 33039683
    rs121912451 LS-SNP   dbSNP   A 134 S - > N 3/10 Helix 1% (Buried) 21 33040830
    rs121912446 LS-SNP   dbSNP   A 144 L - > S Beta Ladder 27% (Intermediate) 21 33040860
    rs121912447 LS-SNP   dbSNP   A 145 A - > T Beta Ladder 0% (Buried) 21 33040862
    rs121912449 LS-SNP   dbSNP   A 151 I - > T Beta Ladder 21% (Intermediate) 21 33040881