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Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. This file contains the 50S subunit for molecule I.
Biology and Chemistry Report
2WDI
  •   Structure Details   Hide

    Structure Keywords

    Keywords RIBOSOME
    Text METHYLATION, TRANSLATION, PAROMOMYCIN, TRNA-BINDING, TRNA, MRNA, RIBOSOME, REPRESSOR, RNA-BINDING, RIBONUCLEOPROTEIN, TRANSLATION REGULATION, RRNA-BINDING, METAL-BINDING, RIBOSOMAL PROTEIN

    Polymeric Molecules

    Chain 0
    Description 50S RIBOSOMAL PROTEIN L27 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 9529.2 
    Source Method natural source  
    Chain 9
    Description 50S RIBOSOMAL PROTEIN L36 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 4435.4 
    Source Method natural source  
    Chain A
    Description 23S RIBOSOMAL RNA 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 917798.0 
    Source Method synthetic  
    Chain B
    Description 5S RIBOSOMAL RNA 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 39494.8 
    Source Method synthetic  
    Chain C
    Description 50S RIBOSOMAL PROTEIN L1 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 24872.9 
    Source Method natural source  
    Chain D
    Description 50S RIBOSOMAL PROTEIN L2 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 30532.8 
    Source Method natural source  
    Chain E
    Description 50S RIBOSOMAL PROTEIN L3 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 22450.4 
    Source Method natural source  
    Chain F
    Description 50S RIBOSOMAL PROTEIN L4 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 23272.1 
    Source Method natural source  
    Chain G
    Description 50S RIBOSOMAL PROTEIN L5 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 21061.8 
    Source Method natural source  
    Chain H
    Description 50S RIBOSOMAL PROTEIN L6 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 19569.1 
    Source Method natural source  
    Chain I
    Description 50S RIBOSOMAL PROTEIN L9 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 16422.3 
    Source Method natural source  
    Chain 1
    Description 50S RIBOSOMAL PROTEIN L28 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11004.3 
    Source Method natural source  
    Chain N
    Description 50S RIBOSOMAL PROTEIN L13 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 15928.0 
    Source Method natural source  
    Chain O
    Description 50S RIBOSOMAL PROTEIN L14 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13323.7 
    Source Method natural source  
    Chain P
    Description 50S RIBOSOMAL PROTEIN L15 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 16319.3 
    Source Method natural source  
    Chain Q
    Description 50S RIBOSOMAL PROTEIN L16 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 15994.0 
    Source Method natural source  
    Chain R
    Description 50S RIBOSOMAL PROTEIN L17 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13750.3 
    Source Method natural source  
    Chain S
    Description 50S RIBOSOMAL PROTEIN L18 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 12640.0 
    Source Method natural source  
    Chain T
    Description 50S RIBOSOMAL PROTEIN L19 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17189.0 
    Source Method natural source  
    Chain U
    Description 50S RIBOSOMAL PROTEIN L20 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13779.4 
    Source Method natural source  
    Chain V
    Description 50S RIBOSOMAL PROTEIN L21 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11069.3 
    Source Method natural source  
    Chain W
    Description 50S RIBOSOMAL PROTEIN L22 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 12808.2 
    Source Method natural source  
    Chain 2
    Description 50S RIBOSOMAL PROTEIN L29 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 8670.3 
    Source Method natural source  
    Chain X
    Description 50S RIBOSOMAL PROTEIN L23 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10759.9 
    Source Method natural source  
    Chain Y
    Description 50S RIBOSOMAL PROTEIN L24 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 12085.7 
    Source Method natural source  
    Chain Z
    Description 50S RIBOSOMAL PROTEIN L25 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 23238.8 
    Source Method natural source  
    Chain 3
    Description 50S RIBOSOMAL PROTEIN L30 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 6799.2 
    Source Method natural source  
    Chain 4
    Description 50S RIBOSOMAL PROTEIN L31 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 8300.6 
    Source Method natural source  
    Chain 5
    Description 50S RIBOSOMAL PROTEIN L32 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 6722.1 
    Source Method natural source  
    Chain 6
    Description 50S RIBOSOMAL PROTEIN L33 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 6632.9 
    Source Method natural source  
    Chain 7
    Description 50S RIBOSOMAL PROTEIN L34 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 6132.5 
    Source Method natural source  
    Chain 8
    Description 50S RIBOSOMAL PROTEIN L35 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 7506.3 
    Source Method natural source  

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)

     
  •   Gene Details   Hide

    Natural Source

    Chain 9
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain 8
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain 7
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain 6
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain 5
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain 4
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain 3
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain 2
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain P
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain O
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain N
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain I
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain H
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain G
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain F
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain E
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain D
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain C
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain B
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain A
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain Q
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain R
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain S
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain T
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain U
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain V
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain W
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain X
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain Y
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain Z
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain 0
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain 1
    Scientific Name Thermus thermophilus  
    Strain HB8

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    - - 3168387     50S ribosomal protein L27 RPMA    
    - - 3167970     50S ribosomal protein L36 RPMJ    
    - - 3168861     50S ribosomal protein L1 RPLA    
    - - 3168720     50S ribosomal protein L2 RPLB    
    - - 3167929     50S ribosomal protein L3 RPLC    
    - - 3169803     50S ribosomal protein L5 RPLE    
    - - 3169807     50S ribosomal protein L6 RPLF    
    - - 3168676     50S ribosomal protein L9 RPLI    
    - - 3168485     50S ribosomal protein L13 RPLM    
    - - 3168111     50S ribosomal protein L28 RPMB    
    - - 3168727     50S ribosomal protein L14 RPLN    
    - - 3168730     50S ribosomal protein L15 RPLO    
    - - 3168285     50S ribosomal protein L16 RPLP    
    - - 3168022     50S ribosomal protein L17 RPLQ    
    - - 3169978     50S ribosomal protein L18 RPLR    
    - - 3168297     50S ribosomal protein L19 RPLS    
    - - 3169980     50S ribosomal protein L20 RPLT    
    - - 3169471     50S ribosomal protein L21 RPLU    
    - - 3169835     50S ribosomal protein L22 RPLV    
    - - 3168722     50S ribosomal protein L23 RPLW    
    - - 3169836     50S ribosomal protein L24 RPLX    
    - - 3169832     50S ribosomal protein L29 TTHA1684    
    - - 3169859     50S ribosomal protein L25 TTHA1589    
    - - 3169818     50S ribosomal protein L30 RPMD    
    - - 3168247     50S ribosomal protein L31 RPME    
    - - 3168304     50S ribosomal protein L32 RPMF    
    - - 3167958     50S ribosomal protein L33 RPMG    
    - - 3169919     50S ribosomal protein L34 RPMH    
    - - 3169498     50S ribosomal protein L35 RPMI