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An Information Portal to 105212 Biological Macromolecular Structures

Crystal structure of the human dual specificity tyrosine- phosphorylation-regulated kinase 1A
Biology and Chemistry Report
2VX3
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text SERINE/THREONINE-PROTEIN KINASE, MINIBRAIN HOMOLOG, NUCLEOTIDE-BINDING, TRANSFERASE, PHOSPHOPROTEIN, TYROSINE-PROTEIN KINASE, CASP8, KINASE

    Polymeric Molecules

    Chain A,B,C,D
    Description DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION- REGULATED KINASE 1A 
    Fragment RESIDUES 127-485 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 44553.6 
    Source Method genetically manipulated  
    Entity Name PROTEIN KINASE MINIBRAIN HOMOLOG, MNBH, HMNB, HP86, DUAL SPECIFICITY YAK1-RELATED KINASE 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CL  CHLORIDE ION  Cl   35.45  View 
    D15  N-(5-{[(2S)-4-amino-2-(3-chlorophenyl)butanoyl]amino}-1H-indazol-3-yl)benzamide  C24 H22 Cl N5 O2   447.92  View 
    P6G  HEXAETHYLENE GLYCOL  C12 H26 O7   282.33  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D DYR1A_HUMAN O60769     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    A B C D  2.7.12.1        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    46777   Protein Autophosphorylation  The Phosphorylation by a Protein of One or More of Its Own Amino Acid Residues (cis Autophosphorylation) or Residues On an Identical Protein (trans Autophosphorylation). 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4674   Protein Serine/threonine Kinase Activity  Catalysis of the Reactions: ATP + Protein Serine = Adp + Protein Serine Phosphate and ATP + Protein Threonine = Adp + Protein Threonine Phosphate. 
    4712   Protein Serine/threonine/tyrosine Kinase Activity  Catalysis of the Reactions: ATP + a Protein Serine = Adp + Protein Serine Phosphate; ATP + a Protein Threonine = Adp + Protein Threonine Phosphate; and ATP + a Protein Tyrosine = Adp + Protein Tyrosine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Variant R3 Prare2
    Host Strain Bl21(de3)
    Host Plasmid Name PNIC28-BSA4


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    21 21q22.13 1859     dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A DYRK1A    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs113004433 LS-SNP   dbSNP   A 328 R - > W Coil 1% (Buried) 21 38865349 PTR
    rs200519444 LS-SNP   dbSNP   A 341 A - > S Helix 16% (Intermediate) 21 38865388
    rs145857775 LS-SNP   dbSNP   A 356 T - > A Helix 6% (Buried) 21 38865433
    rs141150482 LS-SNP   dbSNP   A 409 K - > E Coil 51% (Exposed) 21 38868546
    rs150730235 LS-SNP   dbSNP   A 420 T - > A Coil 50% (Exposed) 21 38877604
    rs202011970 LS-SNP   dbSNP   A 421 R - > H Bend 24% (Intermediate) 21 38877608
    rs202018285 LS-SNP   dbSNP   A 423 L - > F Helix 4% (Buried) 21 38877613