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hPPARgamma Ligand binding domain in complex with 6-oxoOTE
Biology and Chemistry Report
2VV4
  •   Structure Details   Hide

    Structure Keywords

    Keywords RECEPTOR
    Text RECEPTOR, NUCLEAR RECEPTOR, LIGAND BINDING DOMAIN, OXIDISED FATTY ACID, TRANSCRIPTION FACTOR

    Polymeric Molecules

    Chain A
    Description PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA 
    Fragment LIGAND BINDING DOMAIN, RESIDUES 202-475 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 31449.8 
    Source Method genetically manipulated  
    Entity Name PPAR GAMMA, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3 
    Chain B
    Description PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA 
    Fragment LIGAND BINDING DOMAIN, RESIDUES 202-475 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 31463.8 
    Source Method genetically manipulated  
    Entity Name PPAR GAMMA, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    6OB  (8E,10S,12Z)-10-hydroxy-6-oxooctadeca-8,12-dienoic acid  C18 H30 O4   310.43  View 
    6OC  (8R,9Z,12Z)-8-hydroxy-6-oxooctadeca-9,12-dienoic acid  C18 H30 O4   310.43  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A PPARG_HUMAN A8K3G6     
    B PPARG_HUMAN A8K3G6     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Variant Rosetta
    Host Strain Bl21
    Host Plasmid Name PET30A MODIFIED


    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Variant Rosetta
    Host Strain Bl21
    Host Plasmid Name PET30A MODIFIED


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    3 3p25 5468     peroxisome proliferator-activated receptor gamma PPARG    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs150296212 LS-SNP   dbSNP   A 212 R - > Q Helix 35% (Intermediate) 3 12447480
    rs76480583 LS-SNP   dbSNP   A 238 T - > K Turn 78% (Exposed) 3 12447558
    rs200116144 LS-SNP   dbSNP   A 246 P - > L Coil 25% (Intermediate) 3 12458204
    rs147996578 LS-SNP   dbSNP   A 248 V - > I Beta Ladder 43% (Exposed) 3 12458209
    rs111400984 LS-SNP   dbSNP   A 281 I - > T Helix 17% (Intermediate) 3 12458309
    rs121909242 LS-SNP   dbSNP   A 286 Q - > P Helix 11% (Intermediate) 3 12458324 6OC
    rs28936407 LS-SNP   dbSNP   A 288 R - > H Helix 38% (Exposed) 3 12458330 6OC
    rs72551362 LS-SNP   dbSNP   A 290 V - > M Helix 5% (Buried) 3 12458335
    rs139894525 LS-SNP   dbSNP   A 307 V - > L 3/10 Helix 49% (Exposed) 3 12458386
    rs145566594 LS-SNP   dbSNP   A 328 T - > P Helix 0% (Buried) 3 12458449
    rs141683496 LS-SNP   dbSNP   A 343 E - > K Turn 45% (Exposed) 3 12458494 6OC
    rs140204299 LS-SNP   dbSNP   A 357 R - > Q Turn 46% (Exposed) 3 12458537
    rs188622140 LS-SNP   dbSNP   A 360 F - > C 3/10 Helix 3% (Buried) 3 12458546
    rs72551363 LS-SNP   dbSNP   A 360 F - > L 3/10 Helix 3% (Buried) 3 12458547
    rs148844673 LS-SNP   dbSNP   A 382 S - > R Helix 17% (Intermediate) 3 12458613
    rs72551364 LS-SNP   dbSNP   A 397 R - > C Bend 5% (Buried) 3 12475399
    rs186728157 LS-SNP   dbSNP   A 427 E - > A Turn 91% (Exposed) 3 12475490
    rs62243567 LS-SNP   dbSNP   A 449 H - > N Helix 13% (Intermediate) 3 12475555 6OC
    rs201781800 LS-SNP   dbSNP   A 459 T - > M Helix 55% (Exposed) 3 12475586
    rs121909244 LS-SNP   dbSNP   A 467 P - > L Helix 68% (Exposed) 3 12475610