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hPPARgamma Ligand binding domain in complex with 9-(S)-HODE
Biology and Chemistry Report
2VSR
  •   Structure Details   Hide

    Structure Keywords

    Keywords RECEPTOR
    Text TRANSCRIPTION REGULATION, LIGAND BINDING DOMAIN, NUCLEAR RECEPTOR, DIABETES MELLITUS, ZINC-FINGER, DNA-BINDING, TRANSCRIPTION, OBESITY, NUCLEUS, RECEPTOR, ACTIVATOR, OXIDISED FATTY ACID, TRANSCRIPTION FACTOR, METAL-BINDING, PHOSPHOPROTEIN, DISEASE MUTATION

    Polymeric Molecules

    Chain A,B
    Description PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA 
    Fragment LIGAND BINDING DOMAIN, RESIDUES 202-475 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 31449.8 
    Source Method genetically manipulated  
    Entity Name PPAR GAMMA, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    9HO  (9S,10E,12Z)-9-hydroxyoctadeca-10,12-dienoic acid  C18 H32 O3   296.45  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B PPARG_HUMAN A8K3G6     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Variant Rosetta
    Host Strain Bl21
    Host Plasmid Name PET30A MODIFIED


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    3 3p25 5468     peroxisome proliferator-activated receptor gamma PPARG    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs150296212 LS-SNP   dbSNP   A 212 R - > Q Helix 22% (Intermediate) 3 12447480
    rs76480583 LS-SNP   dbSNP   A 238 T - > K Helix 71% (Exposed) 3 12447558
    rs200116144 LS-SNP   dbSNP   A 246 P - > L Coil 24% (Intermediate) 3 12458204
    rs147996578 LS-SNP   dbSNP   A 248 V - > I Beta Ladder 42% (Exposed) 3 12458209
    rs111400984 LS-SNP   dbSNP   A 281 I - > T Helix 20% (Intermediate) 3 12458309 9HO
    rs121909242 LS-SNP   dbSNP   A 286 Q - > P Helix 7% (Buried) 3 12458324 9HO
    rs28936407 LS-SNP   dbSNP   A 288 R - > H Helix 43% (Exposed) 3 12458330 9HO
    rs72551362 LS-SNP   dbSNP   A 290 V - > M Helix 6% (Buried) 3 12458335
    rs139894525 LS-SNP   dbSNP   A 307 V - > L 3/10 Helix 48% (Exposed) 3 12458386
    rs145566594 LS-SNP   dbSNP   A 328 T - > P Helix 0% (Buried) 3 12458449
    rs141683496 LS-SNP   dbSNP   A 343 E - > K 3/10 Helix 71% (Exposed) 3 12458494 9HO
    rs140204299 LS-SNP   dbSNP   A 357 R - > Q Coil 33% (Intermediate) 3 12458537
    rs188622140 LS-SNP   dbSNP   A 360 F - > C Turn 4% (Buried) 3 12458546 9HO
    rs72551363 LS-SNP   dbSNP   A 360 F - > L Turn 4% (Buried) 3 12458547 9HO
    rs148844673 LS-SNP   dbSNP   A 382 S - > R Helix 16% (Intermediate) 3 12458613
    rs72551364 LS-SNP   dbSNP   A 397 R - > C Coil 4% (Buried) 3 12475399
    rs186728157 LS-SNP   dbSNP   A 427 E - > A Turn 93% (Exposed) 3 12475490
    rs62243567 LS-SNP   dbSNP   A 449 H - > N Helix 9% (Buried) 3 12475555 9HO
    rs201781800 LS-SNP   dbSNP   A 459 T - > M Helix 49% (Exposed) 3 12475586
    rs121909244 LS-SNP   dbSNP   A 467 P - > L Helix 68% (Exposed) 3 12475610