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An Information Portal to 105025 Biological Macromolecular Structures

STRUCTURE OF THE PDK1 PH DOMAIN K465E MUTANT
Biology and Chemistry Report
2VKI
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text PLECKSTRIN HOMOLOGY, TRANSFERASE, CANCER, DIABETES

    Polymeric Molecules

    Chain A
    Description 3-PHOPSHOINOSITIDE DEPENDENT PROTEIN KINASE 1 
    Fragment PLECKSTRIN HOMOLOGY (PH) DOMAIN, RESIDUES 409-556 
    Mutation YES 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17549.0 
    Source Method genetically manipulated  
    Entity Name HPDK1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A PDPK1_HUMAN H0Y4Z0     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.11.1      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Plasmid Name PGEX6P1


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    16 16p13.3 5170     3-phosphoinositide dependent protein kinase 1 PDPK1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs149931764 LS-SNP   dbSNP   A 411 N - > S Coil 84% (Exposed) 16 2636783
    rs145034828 LS-SNP   dbSNP   A 429 Q - > E Coil 41% (Exposed) 16 2636836
    rs146217676 LS-SNP   dbSNP   A 440 E - > V Helix 70% (Exposed) 16 2636870
    rs148008907 LS-SNP   dbSNP   A 546 R - > Q Helix 56% (Exposed) 16 2647734