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HUMAN BACE-1 IN COMPLEX WITH N-((1S,2R)-3-(((1S)-2-(CYCLOHEXYLAMINO)-1-METHYL-2-OXOETHYL)AMINO)-2-HYDROXY-1-(PHENYLMETHYL)PROPYL)-3-(ETHYLAMINO)-5-(2-OXO-1-PYRROLIDINYL)BENZAMIDE
Biology and Chemistry Report
2VJ6
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE
    Text MEMBRANE, HYDROLASE, MEMAPSIN-2, GLYCOPROTEIN

    Polymeric Molecules

    Chain A
    Description BETA-SECRETASE 1 
    Fragment RESIDUES 61-452 
    Mutation YES 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 43761.8 
    Source Method genetically manipulated  
    Entity Name BETA-SITE APP CLEAVING ENZYME 1, BETA-SITE AMYLOID PRECURSOR PROTEIN CLEAVING ENZYME 1, MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 2, MEMAPSIN-2, ASPARTYL PROTEASE 2, ASP 2, ASP2, BACE-1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    VG5  N-[(1S,2R)-1-benzyl-3-{[(1S)-2-(cyclohexylamino)-1-methyl-2-oxoethyl]amino}-2-hydroxypropyl]-3-(ethylamino)-5-(2-oxopyrrolidin-1-yl)benzamide  C32 H45 N5 O4   563.73  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A BACE1_HUMAN A0M8W7     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    3.4.23.46        

    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Cricetulus griseus  
    Host Tissue Ovary


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    11 11q23.2-q23.3 23621     beta-site APP-cleaving enzyme 1 BACE1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs17857093 LS-SNP   dbSNP   A 118 S - > F Coil 7% (Buried) 11 117166061
    rs138138981 LS-SNP   dbSNP   A 122 R - > Q Beta Ladder 60% (Exposed) 11 117166049
    rs200733909 LS-SNP   dbSNP   A 125 R - > W Beta Ladder 88% (Exposed) 11 117166041
    rs151257620 LS-SNP   dbSNP   A 149 P - > T Turn 28% (Intermediate) 11 117165969
    rs200695125 LS-SNP   dbSNP   A 232 G - > R Coil 46% (Exposed) 11 117164598
    rs201550686 LS-SNP   dbSNP   A 243 S - > W 3/10 Helix 66% (Exposed) 11 117163882
    rs145565779 LS-SNP   dbSNP   A 263 I - > V Coil 2% (Buried) 11 117163823
    rs28989503 LS-SNP   dbSNP   A 265 V - > A Beta Ladder 18% (Intermediate) 11 117163816
    rs140050693 LS-SNP   dbSNP   A 272 Q - > H Beta Ladder 67% (Exposed) 11 117163794
    rs149860623 LS-SNP   dbSNP   A 335 T - > S Coil 44% (Exposed) 11 117161704
    rs139977300 LS-SNP   dbSNP   A 389 S - > P Bend 78% (Exposed) 11 117161303