POP-OUT | CLOSE
 
CRYSTAL STRUCTURE OF HUMAN COMPLEMENT FACTOR H, SCR DOMAINS 6-8 (H402 RISK VARIANT), IN COMPLEX WITH LIGAND.
Biology and Chemistry Report
2V8E
  •   Structure Details   Hide

    Structure Keywords

    Keywords IMMUNE SYSTEM
    Text SUCROSE OCTASULPHATE, AGE-RELATED MACULAR DEGENERATION, SUSHI, SECRETED, FACTOR H, COMPLEMENT, COMPLEMENT ALTERNATE PATHWAY, IMMUNE SYSTEM, DISEASE MUTATION, GLYCOSAMINOGLYCAN, GLYCOPROTEIN, INNATE IMMUNITY, IMMUNE RESPONSE

    Polymeric Molecules

    Chain A
    Description COMPLEMENT FACTOR H 
    Fragment DOMAINS 6,7 AND 8, RESIDUES 322-506 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 21287.7 
    Source Method genetically manipulated  
    Entity Name H FACTOR 1, HUMAN COMPLEMENT FACTOR H 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CL  CHLORIDE ION  Cl   35.45  View 
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    SCR  SUCROSE OCTASULFATE  C12 H22 O35 S8   982.80  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A CFAH_HUMAN A5PL14     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3)
    Host Plasmid Name PET-14B


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q32 3075     complement factor H CFH    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs200203654 LS-SNP   dbSNP   A 330 I - > T Coil 11% (Intermediate) 1 196658574
    rs145650378 LS-SNP   dbSNP   A 371 H - > N Beta Ladder 32% (Intermediate) 1 196658696
    rs201671665 LS-SNP   dbSNP   A 400 Q - > K Bend 65% (Exposed) 1 196659231
    rs199705026 LS-SNP   dbSNP   A 405 K - > N Beta Ladder 57% (Exposed) 1 196659248 SCR
    rs121913056 LS-SNP   dbSNP   A 431 C - > S Beta Ladder 1% (Buried) 1 196659324
    rs200644601 LS-SNP   dbSNP   A 437 S - > Y Beta Ladder 41% (Exposed) 1 196659343
    rs200608085 LS-SNP   dbSNP   A 472 K - > R Beta Ladder 55% (Exposed) 1 196682943
    rs138346051 LS-SNP   dbSNP   A 482 V - > A Coil 45% (Exposed) 1 196682973
    rs55954153 LS-SNP   dbSNP   A 485 D - > G Bend 77% (Exposed) 1 196682982
    rs144361002 LS-SNP   dbSNP   A 492 I - > V Beta Ladder 7% (Buried) 1 196683002
    rs1061171 LS-SNP   dbSNP   A 493 T - > R Beta Ladder 25% (Intermediate) 1 196683006