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CONFORMATIONAL CHANGES IN THE (ALA-84-VAL) MUTANT OF TUMOR NECROSIS FACTOR
Biology and Chemistry Report
2TUN
  •   Structure Details   Hide

    Structure Keywords

    Keywords LYMPHOKINE
    Text LYMPHOKINE

    Polymeric Molecules

    Chain A,B,C,D,E,F
    Description TUMOR NECROSIS FACTOR-ALPHA 
    Mutation A84V 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17396.9 
    Source Method genetically manipulated  

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D,E,F TNFA_HUMAN P01375     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D,E,F
    GO ID   Ontology GO Term Definition
    6955   Immune Response  Any Immune System Process That Functions in the Calibrated Response of an Organism to a Potential Internal or Invasive Threat. 
    16020   Membrane  Double Layer of Lipid Molecules That Encloses All Cells and in Eukaryotes Many Organelles; May Be a Single or Double Lipid Bilayer; Also Includes Associated Proteins. 
    5164   Tumor Necrosis Factor Receptor Binding  Interacting Selectively and Non Covalently with the Tumor Necrosis Factor Receptor. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D,E,F
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    6 6p21.3 7124     tumor necrosis factor TNF    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs4645843 LS-SNP   dbSNP   A 8 P - > L Coil 24% (Intermediate) 6_ssto_hap7 2875363
    rs190788828 LS-SNP   dbSNP   A 11 K - > T Coil 27% (Intermediate) 6 31544571
    rs1800620 LS-SNP   dbSNP   A 18 A - > T Beta Ladder 1% (Buried) 6_ssto_hap7 2875392
    rs140654183 LS-SNP   dbSNP   A 105 T - > N Coil 51% (Exposed) 6 31545154
    rs180710258 LS-SNP   dbSNP   A 117 P - > S Coil 7% (Buried) 6 31545189
    rs11574936 LS-SNP   dbSNP   A 118 I - > N Beta Ladder 2% (Buried) 6_ssto_hap7 2875994
    rs141307820 LS-SNP   dbSNP   A 138 R - > W Coil 18% (Intermediate) 6 31545252
    rs186486397 LS-SNP   dbSNP   A 150 V - > I Beta Ladder 3% (Buried) 6 31545288