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Solution structure of the bromodomain of human BRPF1 in complex with histone H4K5ac peptide
Biology and Chemistry Report
2RS9
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSCRIPTION
    Text Human BRPF1 protein, Bromodomain and PHD finger-containing protein 1, BR140 Protein, transcription activator, Histone, TRANSCRIPTION, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI

    Polymeric Molecules

    Chain A
    Description Acetylated lysine 5 of peptide from Histone H4 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 960.1 
    Source Method genetically manipulated  
    Entity Name H4K5ac 
    Chain B
    Description Peregrin 
    Fragment Bromodomain, UNP residues 633-740 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13777.6 
    Source Method genetically manipulated  
    Entity Name Bromodomain and PHD finger-containing protein 1, Protein Br140 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A H4_HUMAN A2VCL0     
    B BRPF1_HUMAN B4DEZ6     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene brpf1, br140
    Host Scientific Name Cell-free synthesis  


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q21.2 8370     histone cluster 2, H4a HIST2H4A    
    1 1q21 554313     histone cluster 2, H4b HIST2H4B    
    3 3p26-p25 7862     bromodomain and PHD finger containing, 1 BRPF1    
    6 6p21.33 8294     histone cluster 1, H4i HIST1H4I    
    6 6p22.2 8359     histone cluster 1, H4a HIST1H4A    
    6 6p22.2 8360     histone cluster 1, H4d HIST1H4D    
    6 6p22.2 8361     histone cluster 1, H4f HIST1H4F    
    6 6p22.1 8362     histone cluster 1, H4k HIST1H4K    
    6 6p22.1 8363     histone cluster 1, H4j HIST1H4J    
    6 6p22.1 8364     histone cluster 1, H4c HIST1H4C    
    6 6p22.1 8365     histone cluster 1, H4h HIST1H4H    
    6 6p22.2 8366     histone cluster 1, H4b HIST1H4B    
    6 6p22.2 8367     histone cluster 1, H4e HIST1H4E    
    6 6p22.1 8368     histone cluster 1, H4l HIST1H4L    
    12 12p12.3 121504     histone cluster 4, H4 HIST4H4    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs150442469 LS-SNP   dbSNP   B 101 R - > H Coil 86% (Exposed) 3 9784701
    rs199652982 LS-SNP   dbSNP   B 145 R - > C Helix 69% (Exposed) 3 9784832
    rs145244506 LS-SNP   dbSNP   B 154 M - > I Helix 55% (Exposed) 3 9784861