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Crystal Structure of Rotavirus SA11 VP1/RNA (GGCUUU) Complex
Biology and Chemistry Report
2R7V
  •   Structure Details   Hide

    Structure Keywords

    Keywords transferase/RNA
    Text Viral protein, RNA-dependent RNA polymerase, single subunit polymerase fold, fingers, palm, thumb, right hand configuration, RNA-directed RNA polymerase, transferase-RNA COMPLEX

    Polymeric Molecules

    Chain X
    Description RNA (5'-R(*G*GP*CP*UP*UP*U)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 1869.2 
    Source Method synthetic  
    Chain A
    Description RNA-dependent RNA polymerase 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 126325.0 
    Source Method genetically manipulated  

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A RDRP_ROTS1 P22678     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.7.48      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    1172   Transcription RNA Templated  The Cellular Synthesis of RNA On a Template of Rna. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    19079   Viral Genome Replication  Any Process Involved Directly in Viral Genome Replication Including Viral Nucleotide Metabolism. 
    19012   Virion  The Complete Fully Infectious Extracellular Virus Particle. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    3723   RNA Binding  Interacting Selectively and Non Covalently with an RNA Molecule or a Portion Thereof. 
    3968   RNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1); Uses an RNA Template. 
    16740   Transferase Activity  Catalysis of the Transfer of a Group E.g. a Methyl Group Glycosyl Group Acyl Group Phosphorus Containing or Other Groups From One Compound (generally Regarded As the Donor) to Another Compound (generally Regarded As the Acceptor). Transferase Is the Systematic Name For Any Enzyme of EC Class 2. 
    16779   Nucleotidyltransferase Activity  Catalysis of the Transfer of a Nucleotidyl Group to a Reactant. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Scientific Name Simian rotavirus  
    Strain SA11
    Gene gene 1
    Plasmid Details Pcrbac Based Transfer Vector (invitrogen) Is Used to Produce Vp1 Gene Integrated Acnpv
    Host Common Name Fall Armyworm
    Host Scientific Name Spodoptera frugiperda  
    Host Strain Sf21
    Host Vector Type Baculovirus
    Host Plasmid Name pCRBac