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An Information Portal to 109274 Biological Macromolecular Structures

The crystal structure of Ebp1
Biology and Chemistry Report
2Q8K
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSCRIPTION
    Text Ebp1, PA2G4, Methionine Aminopeptidase, pita-bread, TRANSCRIPTION

    Polymeric Molecules

    Chain A
    Description Proliferation-associated protein 2G4 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 44738.2 
    Source Method genetically manipulated  
    Entity Name Cell cycle protein p38-2G4 homolog, hG4-1, ErbB3-binding protein 1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A PA2G4_HUMAN Q9UQ80     

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    6364   RRNA Processing  Any Process Involved in the Conversion of a Primary Ribosomal RNA (rrna) Transcript Into One or More Mature RRNA Molecules. 
    6417   Regulation of Translation  Any Process That Modulates the Frequency Rate or Extent of the Chemical Reactions and Pathways Resulting in the Formation of Proteins by the Translation of Mrna. 
    7050   Cell Cycle Arrest  A Regulatory Process That Halts Progression Through the Cell Cycle During One of the Normal Phases (g1 S G2 M). 
    8283   Cell Proliferation  The Multiplication or Reproduction of Cells Resulting in the Expansion of a Cell Population. 
    43066   Negative Regulation of Apoptotic Process  Any Process That Stops Prevents or Reduces the Frequency Rate or Extent of Cell Death by Apoptotic Process. 
    45597   Positive Regulation of Cell Differentiation  Any Process That Activates or Increases the Frequency Rate or Extent of Cell Differentiation. 
    45892   Negative Regulation of Transcription DNA Templated  Any Process That Stops Prevents or Reduces the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5654   Nucleoplasm  That Part of the Nuclear Content Other Than the Chromosomes or the Nucleolus. 
    5730   Nucleolus  A Small Dense Body One or More of Which Are Present in the Nucleus of Eukaryotic Cells. It Is Rich in RNA and Protein Is Not Bounded by a Limiting Membrane and Is Not Seen During Mitosis. Its Prime Function Is the Transcription of the Nucleolar DNA Into 45s Ribosomal Precursor RNA the Processing of This RNA Into 5.8s 18s and 28s Components of Ribosomal RNA and the Association of These Components with 5s RNA and Proteins Synthesized Outside the Nucleolus. This Association Results in the Formation of Ribonucleoprotein Precursors; These Pass Into the Cytoplasm and Mature Into the 40s and 60s Subunits of the Ribosome. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    16020   Membrane  A Lipid Bilayer Along with All the Proteins and Protein Complexes Embedded in It an Attached to It. 
    30529   Ribonucleoprotein Complex  A Macromolecular Complex Containing Both Protein and RNA Molecules. 
    70062   Extracellular Exosome  A Membrane Bounded Vesicle That Is Released Into the Extracellular Region by Fusion of the Limiting Endosomal Membrane of a Multivesicular Body with the Plasma Membrane. Extracellular Exosomes Also Simply Called Exosomes Have a Diameter of About 40 100 Nm. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3700   Sequence Specific DNA Binding Transcription Factor Activity  Interacting Selectively and Non Covalently with a Specific DNA Sequence in Order to Modulate Transcription. the Transcription Factor May or May Not Also Interact Selectively with a Protein or Macromolecular Complex. 
    3723   RNA Binding  Interacting Selectively and Non Covalently with an RNA Molecule or a Portion Thereof. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    31625   Ubiquitin Protein Ligase Binding  Interacting Selectively and Non Covalently with a Ubiquitin Protein Ligase Enzyme Any of the E3 Proteins. 
    44822   Poly(a) RNA Binding  Interacting Non Covalently with a Poly(a) RNA a RNA Molecule Which Has a Tail of Adenine Bases. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene pa2g4, ebp1
    Host Scientific Name Escherichia coli bl21(de3)  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Strain Bl21 (de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET24d


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    12 12q13.2 5036     proliferation-associated 2G4, 38kDa PA2G4    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs144476801 LS-SNP   dbSNP   A 23 M - > I Helix 31% (Intermediate) 12 56498590
    rs71459343 LS-SNP   dbSNP   A 42 G - > S Coil 94% (Exposed) 12 56500407
    rs150178932 LS-SNP   dbSNP   A 57 M - > T Helix 51% (Exposed) 12 56500453
    rs148811324 LS-SNP   dbSNP   A 74 I - > V Beta Ladder 22% (Intermediate) 12 56500776
    rs11549087 LS-SNP   dbSNP   A 94 S - > G Turn 55% (Exposed) 12 56500836
    rs114268672 LS-SNP   dbSNP   A 106 V - > I Beta Ladder 0% (Buried) 12 56500872
    rs200413925 LS-SNP   dbSNP   A 180 T - > M Beta Ladder 21% (Intermediate) 12 56503066
    rs11549086 LS-SNP   dbSNP   A 230 V - > I Beta Ladder 0% (Buried) 12 56504241
    rs138795633 LS-SNP   dbSNP   A 307 V - > I Coil 1% (Buried) 12 56504824
    rs138090957 LS-SNP   dbSNP   A 340 P - > S 3/10 Helix 51% (Exposed) 12 56505046