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Crystal Structure of BAR domain of APPL1
Biology and Chemistry Report
2Q12
  •   Structure Details   Hide

    Structure Keywords

    Keywords PROTEIN TRANSPORT
    Text APPL1, BAR domain, PROTEIN TRANSPORT

    Polymeric Molecules

    Chain A
    Description DCC-interacting protein 13 alpha 
    Fragment residues 5-265, BAR domain 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 31157.6 
    Source Method genetically manipulated  
    Entity Name Dip13 alpha 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A DP13A_HUMAN Q9UKG1     

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene appl1, appl, dip13a, kiaa1428
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Strain B834
    Host Vector Type Plasmid
    Host Plasmid Name pET28a


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    3 3p14.3 26060     adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 APPL1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs188131823 LS-SNP   dbSNP   A 36 Y - > C Helix 60% (Exposed) 3 57269646
    rs141978531 LS-SNP   dbSNP   A 67 E - > G 3/10 Helix 39% (Exposed) 3 57271566
    rs201654453 LS-SNP   dbSNP   A 72 R - > C Coil 88% (Exposed) 3 57272073
    rs145538605 LS-SNP   dbSNP   A 93 I - > T Helix 21% (Intermediate) 3 57272137
    rs147750872 LS-SNP   dbSNP   A 99 C - > Y Helix 7% (Buried) 3 57274503
    rs142276532 LS-SNP   dbSNP   A 105 T - > A Helix 57% (Exposed) 3 57274520
    rs4381906 LS-SNP   dbSNP   A 108 A - > V Helix 15% (Intermediate) 3 57274530
    rs201464226 LS-SNP   dbSNP   A 110 A - > V Helix 33% (Intermediate) 3 57274536
    rs199855351 LS-SNP   dbSNP   A 132 V - > I Helix 49% (Exposed) 3 57276149
    rs201150623 LS-SNP   dbSNP   A 134 Q - > H Helix 39% (Exposed) 3 57276157
    rs146571495 LS-SNP   dbSNP   A 149 R - > H Helix 62% (Exposed) 3 57276914
    rs200733439 LS-SNP   dbSNP   A 191 K - > Q Helix 24% (Intermediate) 3 57280200
    rs143447963 LS-SNP   dbSNP   A 233 V - > I Helix 46% (Exposed) 3 57281498
    rs143408452 LS-SNP   dbSNP   A 234 Q - > R Helix 45% (Exposed) 3 57281502
    rs201812017 LS-SNP   dbSNP   A 241 D - > A Helix 56% (Exposed) 3 57282238
    rs200911734 LS-SNP   dbSNP   A 250 T - > A Helix 39% (Exposed) 3 57282264