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LIGAND-BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA
Biology and Chemistry Report
2PRG
  •   Structure Details   Hide

    Structure Keywords

    Keywords COMPLEX (THIAZOLIDINEDIONE/RECEPTOR)
    Text COMPLEX (THIAZOLIDINEDIONE-RECEPTOR), LIGAND-BINDING DOMAIN, NUCLEAR RECEPTOR, APO, TRANSCRIPTION FACTOR, ORPHAN RECEPTOR, COMPLEX (THIAZOLIDINEDIONE-RECEPTOR) complex

    Polymeric Molecules

    Chain A,B
    Description PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA 
    Fragment LBD (LIGAND BINDING DOMAIN), RESIDUES 207-477 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 30997.3 
    Source Method genetically manipulated  
    Entity Name E DOMAIN 
    Chain C
    Description NUCLEAR RECEPTOR COACTIVATOR SRC-1 
    Fragment FRAGMENT CONTAINING HD1 & HD2 RESIDUES 628-703 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 9396.3 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    BRL  2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)  C18 H19 N3 O3 S   357.43  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B PPARG_HUMAN A8K3G6     
    C NCOA1_HUMAN O00150     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.3.1.48      

    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Genetic Source

    Chain C
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Subcellular Location Nucleus
    Gene src-1 cdna
    Host Scientific Name Escherichia coli bl21(de3)  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Subcellular Location Cytoplasm
    Host Strain Bl21 (de3)
    Host Vector Type Plasmid
    Host Plasmid Name PRSET A


    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Subcellular Location Nucleus
    Gene human ppar gamma cdna
    Host Scientific Name Escherichia coli bl21(de3)  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Subcellular Location Cytoplasm
    Host Strain Bl21 (de3)
    Host Gene Hppargamma
    Host Vector Type Plasmid
    Host Plasmid Name PRSET A


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    3 3p25 5468     peroxisome proliferator-activated receptor gamma PPARG    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs150296212 LS-SNP   dbSNP   A 212 R - > Q Helix 32% (Intermediate) 3 12447480
    rs76480583 LS-SNP   dbSNP   A 238 T - > K Helix 77% (Exposed) 3 12447558
    rs200116144 LS-SNP   dbSNP   A 246 P - > L Coil 18% (Intermediate) 3 12458204
    rs147996578 LS-SNP   dbSNP   A 248 V - > I Beta Ladder 44% (Exposed) 3 12458209
    rs111400984 LS-SNP   dbSNP   A 281 I - > T Helix 11% (Intermediate) 3 12458309 BRL
    rs121909242 LS-SNP   dbSNP   A 286 Q - > P Helix 10% (Intermediate) 3 12458324 BRL
    rs28936407 LS-SNP   dbSNP   A 288 R - > H Helix 40% (Exposed) 3 12458330 BRL
    rs72551362 LS-SNP   dbSNP   A 290 V - > M Helix 7% (Buried) 3 12458335
    rs139894525 LS-SNP   dbSNP   A 307 V - > L 3/10 Helix 51% (Exposed) 3 12458386
    rs145566594 LS-SNP   dbSNP   A 328 T - > P Helix 0% (Buried) 3 12458449
    rs141683496 LS-SNP   dbSNP   A 343 E - > K Turn 74% (Exposed) 3 12458494
    rs140204299 LS-SNP   dbSNP   A 357 R - > Q Coil 35% (Intermediate) 3 12458537
    rs188622140 LS-SNP   dbSNP   A 360 F - > C Helix 2% (Buried) 3 12458546
    rs72551363 LS-SNP   dbSNP   A 360 F - > L Helix 2% (Buried) 3 12458547
    rs148844673 LS-SNP   dbSNP   A 382 S - > R Helix 14% (Intermediate) 3 12458613
    rs72551364 LS-SNP   dbSNP   A 397 R - > C Bend 3% (Buried) 3 12475399
    rs186728157 LS-SNP   dbSNP   A 427 E - > A Turn 91% (Exposed) 3 12475490
    rs62243567 LS-SNP   dbSNP   A 449 H - > N Helix 7% (Buried) 3 12475555 BRL
    rs201781800 LS-SNP   dbSNP   A 459 T - > M Helix 71% (Exposed) 3 12475586
    rs121909244 LS-SNP   dbSNP   A 467 P - > L Helix 40% (Exposed) 3 12475610
    rs1049021 LS-SNP   dbSNP   C 685 E - > A Coil 77% (Exposed) 2 24930393