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Karyopherin Beta2/Transportin-hnRNPM NLS Complex
Biology and Chemistry Report
2OT8
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSPORT PROTEIN
    Text HEAT REPEAT, NUCLEAR IMPORT COMPLEX, KARYOPHERIN, TRANSPORT PROTEIN

    Polymeric Molecules

    Chain A,B
    Description Transportin-1 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 96623.5 
    Source Method genetically manipulated  
    Entity Name Importin beta-2, Karyopherin beta-2, M9 region interaction protein, MIP 
    Chain C,D
    Description Heterogeneous nuclear ribonucleoprotein M 
    Fragment hnRNPM NLS fragment (residues 41-70) 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 3623.1 
    Source Method genetically manipulated  
    Entity Name hnRNP M 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B TNPO1_HUMAN B4DVC6     
    C,D HNRPM_HUMAN P52272     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain C,D
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene hnrpm
    Host Scientific Name Escherichia coli bl21(de3)  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pGEX-4t3


    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene tnpo1, kpnb2, mip1, trn
    Host Scientific Name Escherichia coli bl21(de3)  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pGEX4t3


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    5 5q13.2 3842     transportin 1 TNPO1    
    19 19p13.2 4670     heterogeneous nuclear ribonucleoprotein M HNRNPM    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs112893057 LS-SNP   dbSNP   A 102 S - > T Bend 75% (Exposed) 5 72151723
    rs200627642 LS-SNP   dbSNP   A 108 A - > V Helix 56% (Exposed) 5 72151742
    rs200553704 LS-SNP   dbSNP   A 119 S - > F Helix 65% (Exposed) 5 72157659
    rs41271137 LS-SNP   dbSNP   A 155 I - > F Helix 7% (Buried) 5 72161447
    rs113424229 LS-SNP   dbSNP   A 174 I - > V Helix 56% (Exposed) 5 72161504
    rs149944168 LS-SNP   dbSNP   A 215 S - > C Helix 42% (Exposed) 5 72168537
    rs1135608 LS-SNP   dbSNP   A 217 I - > T Helix 3% (Buried) 5 72168543
    rs74481451 LS-SNP   dbSNP   A 285 E - > D Turn 68% (Exposed) 5 72173132
    rs144997390 LS-SNP   dbSNP   A 287 P - > R Turn 85% (Exposed) 5 72173137
    rs201671324 LS-SNP   dbSNP   A 289 C - > R Helix 1% (Buried) 5 72173142
    rs200584417 LS-SNP   dbSNP   A 298 P - > S Helix 59% (Exposed) 5 72173169
    rs142209295 LS-SNP   dbSNP   A 397 H - > R Helix 30% (Intermediate) 5 72182960
    rs140476981 LS-SNP   dbSNP   A 400 P - > A Helix 65% (Exposed) 5 72182968
    rs138270381 LS-SNP   dbSNP   A 454 V - > L Helix 0% (Buried) 5 72183985
    rs140988378 LS-SNP   dbSNP   A 476 T - > M Turn 51% (Exposed) 5 72184052
    rs150255663 LS-SNP   dbSNP   A 488 R - > C Helix 16% (Intermediate) 5 72184087
    rs138674722 LS-SNP   dbSNP   A 575 M - > T Helix 69% (Exposed) 5 72187683
    rs201811400 LS-SNP   dbSNP   A 594 A - > T Helix 0% (Buried) 5 72188981
    rs200521874 LS-SNP   dbSNP   A 686 S - > C Helix 2% (Buried) 5 72189467
    rs199950184 LS-SNP   dbSNP   A 744 Q - > R Turn 41% (Exposed) 5 72192895
    rs201701131 LS-SNP   dbSNP   A 821 I - > T Helix 6% (Buried) 5 72196872
    rs113153605 LS-SNP   dbSNP   A 839 V - > I Helix 4% (Buried) 5 72199560
    rs200917341 LS-SNP   dbSNP   A 868 N - > Y Helix 50% (Exposed) 5 72201166
    rs1804722 LS-SNP   dbSNP   A 873 S - > F 3/10 Helix 18% (Intermediate) 5 72201182