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Human Adenovirus type 11 knob in complex with domains SCR1 and SCR2 of CD46 (membrane cofactor protein, MCP)
Biology and Chemistry Report
2O39
  •   Structure Details   Hide

    Structure Keywords

    Keywords VIRAL PROTEIN/immune system
    Text Membrane cofactor protein, MCP, CD46, Adenovirus, fiber knob, Ad11, virus receptor complex, SCR, Short consensus repeat, CCP, complement control protein, VIRAL PROTEIN-immune system COMPLEX

    Polymeric Molecules

    Chain A,B
    Description Fiber protein 
    Fragment residues 129-325 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 22046.7 
    Source Method genetically manipulated  
    Entity Name pIV 
    Chain C,D
    Description Membrane cofactor protein 
    Fragment SCR1 and SCR 2 domains 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14517.7 
    Source Method genetically manipulated  
    Entity Name Trophoblast leukocyte common antigen, TLX, CD46 antigen 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    BMA  BETA-D-MANNOSE  C6 H12 O6   180.16  View 
    CA  CALCIUM ION  Ca   40.08  View 
    NAG  N-ACETYL-D-GLUCOSAMINE  C8 H15 N O6   221.21  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B SPIKE_ADE1P P35774     
    C,D MCP_HUMAN A0T1T0     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    7155   Cell Adhesion  The Attachment of a Cell Either to Another Cell or to an Underlying Substrate Such As the Extracellular Matrix Via Cell Adhesion Molecules. 
    19058   Viral Life Cycle  A Set of Processes Which All Viruses Follow to Ensure Survival; Includes Attachment and Entry of the Virus Particle Decoding of Genome Information Translation of Viral MRNA by Host Ribosomes Genome Replication and Assembly and Release of Viral Particles Containing the Genome. 
    19062   Virion Attachment to Host Cell  The Process by Which a Virion Protein Binds to Molecules On the Host Cellular Surface or Host Cell Surface Projection. 
    19028   Viral Capsid  The Protein Coat That Surrounds the Infective Nucleic Acid in Some Virus Particles. It Comprises Numerous Regularly Arranged Subunits or Capsomeres. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain C,D
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene cd46, mcp
    Host Common Name Chinese Hamster
    Host Scientific Name Cricetulus griseus  
    Host Genus Cricetulus
    Host Cell Type Cho Cell
    Host Cell Line Cho Lec3281
    Host Vector Type Plasmid
    Host Plasmid Name pBJ5


    Chain A,B
    Scientific Name Human adenovirus 11p  
    Genus Mastadenovirus
    Species Human Adenovirus B
    Strain SLOBISKI
    Gene piv
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Strain Rosetta 2 De3
    Host Vector Type Plasmid
    Host Plasmid Name Pet15b


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q32 4179     CD46 molecule, complement regulatory protein CD46    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs121909591 LS-SNP   dbSNP   C 1 C - > Y Coil 5% (Buried) 1 207930365
    rs150429980 LS-SNP   dbSNP   C 32 K - > N Turn 59% (Exposed) 1 207930459
    rs200133631 LS-SNP   dbSNP   C 48 R - > W Bend 82% (Exposed) 1 207930505
    rs115177125 LS-SNP   dbSNP   C 64 T - > A Beta 28% (Intermediate) 1 207930890
    rs116800126 LS-SNP   dbSNP   C 64 T - > I Beta 28% (Intermediate) 1 207930891