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CYP2C8dH complexed with felodipine
Biology and Chemistry Report
2NNJ
  •   Structure Details   Hide

    Structure Keywords

    Keywords OXIDOREDUCTASE,ELECTRON TRANSPORT
    Text CYP2C8; Human P450 2C8; monooxygenases; Felodipine; Plendil; inhibitor complex; palmitic acid, OXIDOREDUCTASE,ELECTRON TRANSPORT

    Polymeric Molecules

    Chain A
    Description Cytochrome P450 2C8 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 54054.8 
    Source Method genetically manipulated  
    Entity Name CYPIIC8; P450 form 1; P450 MP-12/MP-20; P450 IIC2; S-mephenytoin 4-hydroxylase 
    Entity Name Sys E.C.1.14.14.1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    225  FELODIPINE  C18 H19 Cl2 N O4   384.25  View 
    HEM  PROTOPORPHYRIN IX CONTAINING FE  C34 H32 Fe N4 O4   616.49  View 
    PLM  PALMITIC ACID  C16 H32 O2   256.42  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A CP2C8_HUMAN A8K9N8     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    1.14.14.1        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    55114   Oxidation Reduction Process  A Metabolic Process That Results in the Removal or Addition of One or More Electrons to or From a Substance with or Without the Concomitant Removal or Addition of a Proton or Protons. 
    5783   Endoplasmic Reticulum  The Irregular Network of Unit Membranes Visible Only by Electron Microscopy That Occurs in the Cytoplasm of Many Eukaryotic Cells. the Membranes Form a Complex Meshwork of Tubular Channels Which Are Often Expanded Into Slitlike Cavities Called Cisternae. the Er Takes Two Forms Rough (or Granular) with Ribosomes Adhering to the Outer Surface and Smooth (with No Ribosomes Attached). 
    5789   Endoplasmic Reticulum Membrane  The Lipid Bilayer Surrounding the Endoplasmic Reticulum. 
    16020   Membrane  Double Layer of Lipid Molecules That Encloses All Cells and in Eukaryotes Many Organelles; May Be a Single or Double Lipid Bilayer; Also Includes Associated Proteins. 
    31090   Organelle Membrane  A Membrane That Is One of the Two Lipid Bilayers of an Organelle Envelope or the Outermost Membrane of Single Membrane Bound Organelle. 
    43231   Intracellular Membrane Bounded Organelle  Organized Structure of Distinctive Morphology and Function Bounded by a Single or Double Lipid Bilayer Membrane and Occurring Within the Cell. Includes the Nucleus Mitochondria Plastids Vacuoles and Vesicles. Excludes the Plasma Membrane. 
    4497   Monooxygenase Activity  Catalysis of the Incorporation of One Atom From Molecular Oxygen Into a Compound and the Reduction of the Other Atom of Oxygen to Water. 
    16491   Oxidoreductase Activity  Catalysis of an Oxidation Reduction (redox) Reaction a Reversible Chemical Reaction in Which the Oxidation State of an Atom or Atoms Within a Molecule Is Altered. One Substrate Acts As a Hydrogen or Electron Donor and Becomes Oxidized While the Other Acts As Hydrogen or Electron Acceptor and Becomes Reduced. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene cyp2c8
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Vector Type Plasmid
    Host Plasmid Name pCW


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    10 10q23.33 1558     cytochrome P450, family 2, subfamily C, polypeptide 8 CYP2C8    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs113939225 LS-SNP   dbSNP   A 56 N - > S Helix 52% (Exposed) 10 96828993
    rs17851796 LS-SNP   dbSNP   A 82 A - > ST Helix 1% (Buried) 10 96827373
    rs201449274 LS-SNP   dbSNP   A 88 I - > T Turn 47% (Exposed) 10 96827354
    rs201739495 LS-SNP   dbSNP   A 123 I - > N Helix 0% (Buried) 10 96827078
    rs188111115 LS-SNP   dbSNP   A 125 R - > C Helix 80% (Exposed) 10 96827073
    rs61760179 LS-SNP   dbSNP   A 126 F - > *Y Helix 9% (Intermediate) 10 96827272
    rs139650638 LS-SNP   dbSNP   A 130 T - > N Helix 4% (Buried) 10 96827057
    rs183769701 LS-SNP   dbSNP   A 133 N - > K Turn 35% (Intermediate) 10 96827251
    rs201770172 LS-SNP   dbSNP   A 134 F - > *W Turn 70% (Exposed) 10 96827248
    rs61757320 LS-SNP   dbSNP   A 136 M - > *EK Turn 1% (Buried) 10 96827244
    rs11572080 LS-SNP   dbSNP   A 139 R - > K Bend 31% (Intermediate) 10 96827030
    rs41400645 LS-SNP   dbSNP   A 144 R - > C Helix 2% (Buried) 10 96827016
    rs200057634 LS-SNP   dbSNP   A 150 H - > R Helix 54% (Exposed) 10 96826997
    rs201561213 LS-SNP   dbSNP   A 158 K - > E Turn 67% (Exposed) 10 96826974
    rs2275622 LS-SNP   dbSNP   A 163 P - > EK Coil 49% (Exposed) 10 96827178
    rs142886225 LS-SNP   dbSNP   A 171 G - > S Helix 7% (Buried) 10 96824688
    rs11572076 LS-SNP   dbSNP   A 172 C - > Y Helix 2% (Buried) 10 96827150
    rs113008582 LS-SNP   dbSNP   A 176 N - > D Helix 0% (Buried) 10 96824673
    rs201219972 LS-SNP   dbSNP   A 179 C - > S Helix 0% (Buried) 10 96824663
    rs41286886 LS-SNP   dbSNP   A 181 V - > I Helix 1% (Buried) 10 96824658
    rs147150224 LS-SNP   dbSNP   A 182 V - > I Helix 0% (Buried) 10 96824655
    rs72558195 LS-SNP   dbSNP   A 186 R - > *G Coil 17% (Intermediate) 10 96824643
    rs201899315 LS-SNP   dbSNP   A 194 F - > Y Helix 0% (Buried) 10 96824618
    rs201045618 LS-SNP   dbSNP   A 201 F - > Y Helix 16% (Intermediate) 10 96824597
    rs148974310 LS-SNP   dbSNP   A 215 V - > I Helix 18% (Intermediate) 10 96818268
    rs188934928 LS-SNP   dbSNP   A 238 A - > P Helix 42% (Exposed) 10 96818199
    rs200358471 LS-SNP   dbSNP   A 239 L - > P Helix 40% (Exposed) 10 96818195
    rs11572102 LS-SNP   dbSNP   A 244 I - > V Helix 2% (Buried) 10 96818181
    rs150260880 LS-SNP   dbSNP   A 251 H - > P Helix 2% (Buried) 10 96818159
    rs141120323 LS-SNP   dbSNP   A 256 D - > G Coil 43% (Exposed) 10 96818144
    rs1058930 LS-SNP   dbSNP   A 264 I - > M Helix 0% (Buried) 10 96818119
    rs11572103 LS-SNP   dbSNP   A 269 I - > F Helix 17% (Intermediate) 10 96818106
    rs140599093 LS-SNP   dbSNP   A 274 E - > G Turn 28% (Intermediate) 10 96805707
    rs146806199 LS-SNP   dbSNP   A 331 I - > T Turn 8% (Buried) 10 96802804
    rs142361756 LS-SNP   dbSNP   A 335 R - > G Bend 48% (Exposed) 10 96802793
    rs148442781 LS-SNP   dbSNP   A 343 S - > I 3/10 Helix 78% (Exposed) 10 96802768
    rs199691080 LS-SNP   dbSNP   A 354 E - > K Helix 0% (Buried) 10 96802736
    rs45438799 LS-SNP   dbSNP   A 361 L - > F Bend 15% (Intermediate) 10 96802715 HEM
    rs77147096 LS-SNP   dbSNP   A 365 G - > S Coil 7% (Buried) 10 96802703 225
    rs147133669 LS-SNP   dbSNP   A 366 V - > M Bend 49% (Exposed) 10 96802700 HEM,225
    rs143386810 LS-SNP   dbSNP   A 384 G - > S Turn 60% (Exposed) 10 96798795
    rs72558194 LS-SNP   dbSNP   A 390 L - > S Coil 0% (Buried) 10 96798776
    rs74454169 LS-SNP   dbSNP   A 391 L - > M Helix 4% (Buried) 10 96798774 HEM
    rs201421851 LS-SNP   dbSNP   A 393 S - > C Helix 11% (Intermediate) 10 96798767
    rs190807911 LS-SNP   dbSNP   A 394 V - > M Helix 0% (Buried) 10 96798765
    rs201301235 LS-SNP   dbSNP   A 396 H - > P Turn 22% (Intermediate) 10 96798758
    rs186285658 LS-SNP   dbSNP   A 397 D - > N Coil 21% (Intermediate) 10 96798756
    rs113669182 LS-SNP   dbSNP   A 398 D - > G Turn 61% (Exposed) 10 96798752
    rs10509681 LS-SNP   dbSNP   A 399 K - > R Turn 83% (Exposed) 10 96798749
    rs66501115 LS-SNP   dbSNP   A 404 P - > A Turn 10% (Intermediate) 10 96798735
    rs150733212 LS-SNP   dbSNP   A 409 P - > S 3/10 Helix 3% (Buried) 10 96798720
    rs141209951 LS-SNP   dbSNP   A 417 G - > V Bend 45% (Exposed) 10 96798695
    rs148348784 LS-SNP   dbSNP   A 426 M - > V Coil 4% (Buried) 10 96798669
    rs143038562 LS-SNP   dbSNP   A 442 R - > C Helix 23% (Intermediate) 10 96797034
    rs138495387 LS-SNP   dbSNP   A 442 R - > H Helix 23% (Intermediate) 10 96797033
    rs140481138 LS-SNP   dbSNP   A 489 P - > L Beta Ladder 54% (Exposed) 10 96796892