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Solution structure of the tenth complement type repeat of human megalin
Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords

    Text Complement type repeat, receptor, megalin, ldl receptor family, lrp2, LIPID BINDING PROTEIN

    Polymeric Molecules

    Chain A
    Description Low-density lipoprotein receptor-related protein 2 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 5874.2 
    Source Method genetically manipulated  
    Entity Name LRP-2, Glycoprotein 330, gp330, Megalin 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CA  CALCIUM ION  Ca   40.08  View 
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A LRP2_HUMAN O00711     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene lrp2
    Host Scientific Name Komagataella pastoris  
    Host Vector Type Plasmid
    Host Plasmid Name pPICaC

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    2 2q31.1 4036     low density lipoprotein receptor-related protein 2 LRP2    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs144906000 LS-SNP   dbSNP   A 1104 H - > R Coil 98% (Exposed) 2 170101322
    rs201693671 LS-SNP   dbSNP   A 1114 Y - > N Beta Ladder 18% (Intermediate) 2 170101293
    rs183570870 LS-SNP   dbSNP   A 1119 H - > N Coil 80% (Exposed) 2 170101278
    rs149853330 LS-SNP   dbSNP   A 1122 I - > V Beta Ladder 7% (Buried) 2 170101269 CA
    rs191734519 LS-SNP   dbSNP   A 1126 W - > C Bend 51% (Exposed) 2 170101255 CA
    rs200860731 LS-SNP   dbSNP   A 1127 V - > I Turn 29% (Intermediate) 2 170101254 CA
    rs139958910 LS-SNP   dbSNP   A 1132 N - > D Coil 64% (Exposed) 2 170101239 CA
    rs140061784 LS-SNP   dbSNP   A 1145 S - > L Coil 41% (Exposed) 2 170100029
    rs200832633 LS-SNP   dbSNP   A 1147 E - > Q Coil 47% (Exposed) 2 170100024