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Solution structure of human 53BP1 tandem Tudor domains in complex with a histone H4K20me2 peptide
Biology and Chemistry Report
2LVM
  •   Structure Details   Hide

    Structure Keywords

    Keywords CELL CYCLE
    Text dimethylation, CELL CYCLE

    Polymeric Molecules

    Chain A
    Description Tumor suppressor p53-binding protein 1 
    Fragment UNP residues 1484-1603 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13944.9 
    Source Method genetically manipulated  
    Entity Name 53BP1, p53-binding protein 1, p53BP1 
    Chain B
    Description Histone H4 
    Fragment UNP residues 15-28 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 1724.1 
    Source Method genetically manipulated  

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A TP53B_HUMAN F8VY86     
    B H4_HUMAN A2VCL0     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Vector Pgb1


    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene tp53bp1
    Host Scientific Name Escherichia coli  
    Host Vector Ptev


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q21.2 8370     histone cluster 2, H4a HIST2H4A    
    1 1q21 554313     histone cluster 2, H4b HIST2H4B    
    6 6p21.33 8294     histone cluster 1, H4i HIST1H4I    
    6 6p22.1 8359     histone cluster 1, H4a HIST1H4A    
    6 6p22.1 8360     histone cluster 1, H4d HIST1H4D    
    6 6p22.1 8361     histone cluster 1, H4f HIST1H4F    
    6 6p22.1 8362     histone cluster 1, H4k HIST1H4K    
    6 6p22.1 8363     histone cluster 1, H4j HIST1H4J    
    6 6p22.1 8364     histone cluster 1, H4c HIST1H4C    
    6 6p22.1 8365     histone cluster 1, H4h HIST1H4H    
    6 6p22.1 8366     histone cluster 1, H4b HIST1H4B    
    6 6p22.1 8367     histone cluster 1, H4e HIST1H4E    
    6 6p22.1 8368     histone cluster 1, H4l HIST1H4L    
    12 12p12.3 121504     histone cluster 4, H4 HIST4H4    
    15 15q15-q21 7158     tumor protein p53 binding protein 1 TP53BP1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs11554564 LS-SNP   dbSNP   A 1488 G - > W Turn 58% (Exposed) 15 43712707
    rs146431821 LS-SNP   dbSNP   A 1508 R - > Q Beta Ladder 71% (Exposed) 15 43712646
    rs199716902 LS-SNP   dbSNP   A 1565 S - > F Turn 98% (Exposed) 15 43708587
    rs199815368 LS-SNP   dbSNP   B 14 G - > V Coil 168% (Exposed) 6 26021950
    rs183253971 LS-SNP   dbSNP   B 14 G - > D Coil 168% (Exposed) 6 26027437
    rs138908236 LS-SNP   dbSNP   B 18 H - > Y Coil 28% (Intermediate) 6 26027426
    rs150191968 LS-SNP   dbSNP   B 19 R - > C Bend 45% (Exposed) 6 26021964
    rs41266817 LS-SNP   dbSNP   B 19 R - > C Bend 45% (Exposed) 6 26240711
    rs200441194 LS-SNP   dbSNP   B 20 K - > N Coil 12% (Intermediate) 6 26189242
    rs143050720 LS-SNP   dbSNP   B 21 V - > L Coil 1% (Buried) 6 27107151
    rs141965015 LS-SNP   dbSNP   B 27 Q - > L Coil 127% (Exposed) 6 27841206