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Structural Mechanism for Bax Inhibition by Cytomegalovirus Protein vMIA
Biology and Chemistry Report
2LR1
  •   Structure Details   Hide

    Structure Keywords

    Keywords APOPTOSIS/SIGNALING PROTEIN
    Text APOPTOSIS-SIGNALING PROTEIN complex

    Polymeric Molecules

    Chain A
    Description Apoptosis regulator BAX 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 21204.5 
    Source Method genetically manipulated  
    Entity Name Bcl-2-like protein 4, Bcl2-L-4 
    Chain B
    Description Immediate early glycoprotein 
    Fragment UNP residues 130-150 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 2732.3 
    Source Method synthetic  

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A BAX_HUMAN A8K4W1     
    B VGLI_HCMVA P16778     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6915   Apoptotic Process  A Programmed Cell Death Process Which Begins When a Cell Receives an Internal (e.g. DNA Damage) or External Signal (e.g. an Extracellular Death Ligand) and Proceeds Through a Series of Biochemical Events (signaling Pathway Phase) Which Trigger an Execution Phase. the Execution Phase Is the Last Step of an Apoptotic Process and Is Typically Characterized by Rounding Up of the Cell Retraction of Pseudopodes Reduction of Cellular Volume (pyknosis) Chromatin Condensation Nuclear Fragmentation (karyorrhexis) Plasma Membrane Blebbing and Fragmentation of the Cell Into Apoptotic Bodies. When the Execution Phase Is Completed the Cell Has Died. 
    16032   Viral Process  A Multi Organism Process in Which a Virus Is a Participant. the Other Participant Is the Host. Includes Infection of a Host Cell Replication of the Viral Genome and Assembly of Progeny Virus Particles. in Some Cases the Viral Genetic Material May Integrate Into the Host Genome and Only Subsequently Under Particular Circumstances 'complete' Its Life Cycle. 
    43497   Regulation of Protein Heterodimerization Activity  Any Process That Modulates the Frequency Rate or Extent of Protein Heterodimerization Interacting Selectively with a Nonidentical Protein to Form a Heterodimer. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    5739   Mitochondrion  A Semiautonomous Self Replicating Organelle That Occurs in Varying Numbers Shapes and Sizes in the Cytoplasm of Virtually All Eukaryotic Cells. It Is Notably the Site of Tissue Respiration. 
    16020   Membrane  Double Layer of Lipid Molecules That Encloses All Cells and in Eukaryotes Many Organelles; May Be a Single or Double Lipid Bilayer; Also Includes Associated Proteins. 
    16021   Integral Component of Membrane  The Component of a Membrane Consisting of Gene Products and Protein Complexes That Have Some Part That Penetrates At Least One Leaflet of the Membrane Bilayer. This Component Includes Gene Products That Are Buried in the Bilayer with No Exposure Outside the Bilayer. 
    31966   Mitochondrial Membrane  Either of the Lipid Bilayers That Surround the Mitochondrion and Form the Mitochondrial Envelope. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    42802   Identical Protein Binding  Interacting Selectively and Non Covalently with an Identical Protein or Proteins. 
    42803   Protein Homodimerization Activity  Interacting Selectively and Non Covalently with an Identical Protein to Form a Homodimer. 
    46982   Protein Heterodimerization Activity  Interacting Selectively and Non Covalently with a Nonidentical Protein to Form a Heterodimer. 
    51434   Bh3 Domain Binding  Interacting Selectively and Non Covalently with the Bh3 Domain of a Protein of the Bcl 2 Family. the Bh3 Domain Is a Potent Death Domain and Has an Important Role in Protein Protein Interactions and in Cell Death. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene bax, bcl2l4
    Host Scientific Name Escherichia coli  
    Host Vector Pet28


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    19 19q13.3-q13.4 581     BCL2-associated X protein BAX    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs74422693 LS-SNP   dbSNP   A 9 R - > K Coil 116% (Exposed) 19 49458211
    rs144179827 LS-SNP   dbSNP   A 14 T - > I Bend 46% (Exposed) 19 49458811
    rs151036634 LS-SNP   dbSNP   A 15 S - > G Coil 25% (Intermediate) 19 49458813
    rs149808345 LS-SNP   dbSNP   A 29 G - > D Helix 29% (Intermediate) 19 49458856
    rs141306106 LS-SNP   dbSNP   A 38 M - > I Turn 91% (Exposed) 19 49458971
    rs147630961 LS-SNP   dbSNP   A 39 G - > V Turn 86% (Exposed) 19 49458973
    rs36017265 LS-SNP   dbSNP   A 39 G - > R Turn 86% (Exposed) 19 49458972
    rs200153051 LS-SNP   dbSNP   A 54 A - > P Helix 71% (Exposed) 19 49459017
    rs142278713 LS-SNP   dbSNP   A 65 R - > L Helix 77% (Exposed) 19 49459051
    rs202190487 LS-SNP   dbSNP   A 89 R - > Q Helix 77% (Exposed) 19 49459487
    rs190602136 LS-SNP   dbSNP   A 147 R - > Q Turn 71% (Exposed) 19 49464137