POP-OUT | CLOSE

An Information Portal to 108957 Biological Macromolecular Structures

Solution structure of the AF4-AF9 complex
Biology and Chemistry Report
2LM0
  •   Structure Details   Hide

    Structure Keywords

    Keywords NUCLEAR PROTEIN
    Text Intrinsically Disordered, NUCLEAR PROTEIN

    Polymeric Molecules

    Chain A
    Description AF4/FMR2 family member 1/Protein AF-9 chimera 
    Fragment UNP residues 738-779, UNP residues 490-568 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14340.7 
    Source Method genetically manipulated  
    Entity Name ALL1-fused gene from chromosome 4 protein, Protein AF-4, Protein FEL, Proto-oncogene AF4, ALL1-fused gene from chromosome 9 protein, Myeloid/lymphoid or mixed-lineage leukemia translocated to chromosome 3 protein, YEATS domain-containing protein 3 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A AF9_HUMAN P42568     
    A AFF1_HUMAN P51825     

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene aff1, af4, fel, mllt2, pbm1, mllt3, af9, yeats3
    Host Scientific Name Escherichia coli  
    Host Strain Rosetta 2 De3
    Host Vector Pet 32a
    Description Thioredoxin Coding Region Removed by Nde1 Cleavage


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    4 4q21 4299     AF4/FMR2 family, member 1 AFF1    
    9 9p22 4300     myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 MLLT3    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs149088336 LS-SNP   dbSNP   A 740 P - > L Bend 65% (Exposed) 4 88036225
    rs187012782 LS-SNP   dbSNP   A 747 K - > N Coil 49% (Exposed) 4 88036247
    rs200076112 LS-SNP   dbSNP   A 757 P - > S Coil 73% (Exposed) 4 88036275
    rs199871875 LS-SNP   dbSNP   A 768 D - > Y Turn 75% (Exposed) 4 88036308
    rs145284536 LS-SNP   dbSNP   A 778 G - > R Bend 96% (Exposed) 4 88036338
    rs138253823 LS-SNP   dbSNP   A 1493 Q - > R Coil 85% (Exposed) 9 20354831
    rs112053518 LS-SNP   dbSNP   A 1558 L - > P Helix 1% (Buried) 9 20346475
    rs200659348 LS-SNP   dbSNP   A 1568 S - > Y Coil 145% (Exposed) 9 20346445