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Solution structure of the AF4-AF9 complex
Biology and Chemistry Report
2LM0
  •   Structure Details   Hide

    Structure Keywords

    Keywords NUCLEAR PROTEIN
    Text Intrinsically Disordered, NUCLEAR PROTEIN

    Polymeric Molecules

    Chain A
    Description AF4/FMR2 family member 1/Protein AF-9 chimera 
    Fragment UNP residues 738-779, UNP residues 490-568 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14340.7 
    Source Method genetically manipulated  
    Entity Name ALL1-fused gene from chromosome 4 protein, Protein AF-4, Protein FEL, Proto-oncogene AF4, ALL1-fused gene from chromosome 9 protein, Myeloid/lymphoid or mixed-lineage leukemia translocated to chromosome 3 protein, YEATS domain-containing protein 3 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A AF9_HUMAN B1AMQ2     
    A AFF1_HUMAN B4DTU1     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene aff1, af4, fel, mllt2, pbm1, mllt3, af9, yeats3
    Host Scientific Name Escherichia coli  
    Host Strain Rosetta 2 De3
    Host Vector Pet 32a
    Description Thioredoxin Coding Region Removed by Nde1 Cleavage


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    4 4q21 4299     AF4/FMR2 family, member 1 AFF1    
    9 9p22 4300     myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 MLLT3    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs149088336 LS-SNP   dbSNP   A 740 P - > L Bend 65% (Exposed) 4 88036225
    rs187012782 LS-SNP   dbSNP   A 747 K - > N Coil 49% (Exposed) 4 88036247
    rs200076112 LS-SNP   dbSNP   A 757 P - > S Coil 73% (Exposed) 4 88036275
    rs199871875 LS-SNP   dbSNP   A 768 D - > Y Turn 75% (Exposed) 4 88036308
    rs145284536 LS-SNP   dbSNP   A 778 G - > R Bend 96% (Exposed) 4 88036338
    rs138253823 LS-SNP   dbSNP   A 1493 Q - > R Coil 85% (Exposed) 9 20354831
    rs112053518 LS-SNP   dbSNP   A 1558 L - > P Helix 1% (Buried) 9 20346475
    rs200659348 LS-SNP   dbSNP   A 1568 S - > Y Coil 145% (Exposed) 9 20346445