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Solution structure of bb' domains of human protein disulfide isomerase
Biology and Chemistry Report
2K18
  •   Structure Details   Hide

    Structure Keywords

    Keywords ISOMERASE
    Text PDI, endoplasmic reticulum, disulfide bonds, protein folding, Chaperone, Isomerase, Membrane, Redox-active center

    Polymeric Molecules

    Chain A
    Description Protein disulfide-isomerase 
    Fragment residues 135-357 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 25565.1 
    Source Method genetically manipulated  
    Entity Name PDI, Prolyl 4- hydroxylase subunit beta, Cellular thyroid hormone-binding protein, p55 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A PDIA1_HUMAN B2RDQ2     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    5.3.4.1      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene p4hb, erba2l, pdi, pdia1, po4db
    Host Scientific Name Escherichia coli bl21  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Strain Bl21
    Host Vector Type Plasmid
    Host Plasmid Name pGEX-6P1


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    17 17q25 5034     prolyl 4-hydroxylase, beta polypeptide P4HB    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs142762202 LS-SNP   dbSNP   A 4 T - > M Coil 75% (Exposed) 17 79813417
    rs199978948 LS-SNP   dbSNP   A 5 G - > D Coil 84% (Exposed) 17 79813414
    rs201906397 LS-SNP   dbSNP   A 6 P - > L Coil 68% (Exposed) 17 79813411
    rs138621837 LS-SNP   dbSNP   A 15 A - > T Helix 58% (Exposed) 17 79813385
    rs199618174 LS-SNP   dbSNP   A 29 I - > V Beta Ladder 4% (Buried) 17 79813343
    rs150091072 LS-SNP   dbSNP   A 33 K - > E Bend 65% (Exposed) 17 79813331
    rs146846893 LS-SNP   dbSNP   A 37 S - > L Bend 48% (Exposed) 17 79813145
    rs141975271 LS-SNP   dbSNP   A 60 N - > S Coil 50% (Exposed) 17 79813076
    rs202139152 LS-SNP   dbSNP   A 61 S - > CG Helix 77% (Exposed) 17 79813074
    rs200928258 LS-SNP   dbSNP   A 67 Y - > C Turn 21% (Intermediate) 17 79813055
    rs199956742 LS-SNP   dbSNP   A 70 D - > Y Coil 82% (Exposed) 17 79813047
    rs143758998 LS-SNP   dbSNP   A 77 F - > V Beta Ladder 23% (Intermediate) 17 79813026
    rs140683347 LS-SNP   dbSNP   A 84 R - > Q Beta Ladder 63% (Exposed) 17 79805210
    rs200521181 LS-SNP   dbSNP   A 90 E - > V Coil 76% (Exposed) 17 79805192
    rs145040305 LS-SNP   dbSNP   A 108 V - > I Coil 13% (Intermediate) 17 79805139
    rs145146947 LS-SNP   dbSNP   A 134 K - > Q Bend 66% (Exposed) 17 79804891
    rs200313631 LS-SNP   dbSNP   A 139 Y - > C Helix 49% (Exposed) 17 79804875
    rs149995643 LS-SNP   dbSNP   A 139 Y - > D Helix 49% (Exposed) 17 79804876
    rs202131545 LS-SNP   dbSNP   A 141 G - > S Helix 45% (Exposed) 17 79804870
    rs201200527 LS-SNP   dbSNP   A 151 E - > K Helix 40% (Exposed) 17 79804840
    rs201941827 LS-SNP   dbSNP   A 152 S - > R Helix 75% (Exposed) 17 79804837
    rs145209834 LS-SNP   dbSNP   A 163 D - > N Beta Ladder 20% (Intermediate) 17 79804487
    rs199780428 LS-SNP   dbSNP   A 165 D - > N Coil 25% (Intermediate) 17 79804481
    rs201628945 LS-SNP   dbSNP   A 170 Q - > R Helix 61% (Exposed) 17 79804465
    rs200205336 LS-SNP   dbSNP   A 202 S - > L Bend 52% (Exposed) 17 79804369
    rs201332870 LS-SNP   dbSNP   A 204 E - > D Coil 34% (Intermediate) 17 79804362
    rs200458051 LS-SNP   dbSNP   A 206 T - > M Helix 43% (Exposed) 17 79804357
    rs202226696 LS-SNP   dbSNP   A 208 E - > K Helix 50% (Exposed) 17 79804352
    rs147408417 LS-SNP   dbSNP   A 216 R - > CG Helix 62% (Exposed) 17 79804328