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An Information Portal to 105097 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN T790M MUTATION
Biology and Chemistry Report
2JIT
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text EGFR, T790M, KINASE, RECEPTOR, CELL CYCLE, PHOSPHORYLATION, DISEASE MUTATION, NUCLEOTIDE-BINDING, TYROSINE-PROTEIN KINASE, ANTI-ONCOGENE, EPIDERMAL GROWTH FACTOR, ATP-BINDING, TRANSFERASE

    Polymeric Molecules

    Chain A,B
    Description EPIDERMAL GROWTH FACTOR RECEPTOR 
    Fragment KINASE DOMAIN, RESIDUES 696-1022 
    Mutation YES 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 37334.5 
    Source Method genetically manipulated  
    Entity Name RECEPTOR TYROSINE-PROTEIN KINASE ERBB-1 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B EGFR_HUMAN O00688     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    A B  2.7.10.1        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4713   Protein Tyrosine Kinase Activity  Catalysis of the Reaction: ATP + a Protein Tyrosine = Adp + Protein Tyrosine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Spodoptera frugiperda  
    Host Cell Line Sf9
    Host Vector Type Baculovirus
    Host Plasmid Name PACG2T
    Description Egfr 696 1022 T790m


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    7 7p12 1956     epidermal growth factor receptor EGFR    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs28929495 LS-SNP   dbSNP   A 719 G - > CS Beta Ladder 32% (Intermediate) 7 55241707
    rs121913428 LS-SNP   dbSNP   A 719 G - > AD Beta Ladder 32% (Intermediate) 7 55241708
    rs138240620 LS-SNP   dbSNP   A 727 Y - > C Beta Ladder 28% (Intermediate) 7 55241732
    rs121913434 LS-SNP   dbSNP   A 730 L - > F Beta Ladder 23% (Intermediate) 7 55242418
    rs121913446 LS-SNP   dbSNP   A 733 P - > L Coil 1% (Buried) 7 55242428
    rs121913420 LS-SNP   dbSNP   A 734 E - > K Bend 55% (Exposed) 7 55242430
    rs121913430 LS-SNP   dbSNP   A 735 G - > S Bend 83% (Exposed) 7 55242433
    rs121913466 LS-SNP   dbSNP   A 742 V - > A Beta Ladder 0% (Buried) 7 55242455
    rs121913433 LS-SNP   dbSNP   A 745 K - > R Beta Ladder 11% (Intermediate) 7 55242464
    rs121913427 LS-SNP   dbSNP   A 746 E - > K Beta Ladder 16% (Intermediate) 7 55242466
    rs121913229 LS-SNP   dbSNP   A 750 A - > P Turn 13% (Intermediate) 7 55242478
    rs121913464 LS-SNP   dbSNP   A 752 S - > Y Coil 22% (Intermediate) 7 55242485
    rs121913231 LS-SNP   dbSNP   A 753 P - > S Turn 51% (Exposed) 7 55242487
    rs121913418 LS-SNP   dbSNP   A 761 D - > NY Helix 35% (Intermediate) 7 55242511
    rs121913465 LS-SNP   dbSNP   A 768 S - > I Helix 2% (Buried) 7 55249005
    rs147149347 LS-SNP   dbSNP   A 769 V - > M Coil 1% (Buried) 7 55249007
    rs121913432 LS-SNP   dbSNP   A 773 H - > R Turn 11% (Intermediate) 7 55249020
    rs121434569 LS-SNP   dbSNP   A 790 T - > M Beta Ladder 12% (Intermediate) 7 55249071
    rs121913431 LS-SNP   dbSNP   A 810 G - > D Coil 12% (Intermediate) 7 55249131
    rs121913230 LS-SNP   dbSNP   A 810 G - > S Coil 12% (Intermediate) 7 55249130
    rs150749913 LS-SNP   dbSNP   A 827 Y - > F Helix 20% (Intermediate) 7 55259422
    rs150036236 LS-SNP   dbSNP   A 831 R - > H Turn 33% (Intermediate) 7 55259434
    rs146121458 LS-SNP   dbSNP   A 836 R - > H Bend 9% (Intermediate) 7 55259449
    rs143884981 LS-SNP   dbSNP   A 840 A - > T 3/10 Helix 1% (Buried) 7 55259460
    rs146795390 LS-SNP   dbSNP   A 843 V - > I Beta Ladder 0% (Buried) 7 55259469
    rs148934350 LS-SNP   dbSNP   A 848 P - > L Turn 16% (Intermediate) 7 55259485
    rs121913443 LS-SNP   dbSNP   A 858 L - > M Bend 26% (Intermediate) 7 55259514
    rs121434568 LS-SNP   dbSNP   A 858 L - > R Bend 26% (Intermediate) 7 55259515
    rs121913444 LS-SNP   dbSNP   A 861 L - > Q Beta Ladder 49% (Exposed) 7 55259524
    rs104886013 LS-SNP   dbSNP   A 868 E - > K Coil 49% (Exposed) 7 55259544
    rs151064287 LS-SNP   dbSNP   A 892 T - > I Coil 13% (Intermediate) 7 55260508
    rs201830126 LS-SNP   dbSNP   A 955 A - > T 3/10 Helix 19% (Intermediate) 7 55268023
    rs104886026 LS-SNP   dbSNP   A 956 D - > N 3/10 Helix 90% (Exposed) 7 55268026
    rs144496976 LS-SNP   dbSNP   A 962 R - > H Helix 56% (Exposed) 7 55268045
    rs17337451 LS-SNP   dbSNP   A 962 R - > CG Helix 56% (Exposed) 7 55268044
    rs1140476 LS-SNP   dbSNP   A 977 R - > C 3/10 Helix 65% (Exposed) 7 55268089
    rs148019583 LS-SNP   dbSNP   A 1009 D - > N Coil 58% (Exposed) 7 55268959