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STRUCTURE OF CCP MODULE 7 OF COMPLEMENT FACTOR H - THE AMD NOT AT RISK VARIENT (402Y)
Biology and Chemistry Report
2JGX
  •   Structure Details   Hide

    Structure Keywords

    Keywords IMMUNE RESPONSE
    Text AGE RELATED MACULAR DEGENERATION, AGE-RELATED MACULAR DEGENERATION, DISEASE MUTATION, GLYCOSAMINOGLYCAN, COMPLEMENT ALTERNATE PATHWAY, GLYCOPROTEIN, INNATE IMMUNITY, IMMUNE RESPONSE, SUSHI, FACTOR H, COMPLEMENT

    Polymeric Molecules

    Chain A
    Description COMPLEMENT FACTOR H 
    Fragment CCP MODULE 7, RESIDUES 386-446 
    Mutation YES 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 7010.1 
    Source Method genetically manipulated  
    Entity Name H FACTOR 1 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A CFAH_HUMAN A5PL14     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Pichia pastoris  
    Host Strain Km71h
    Host Plasmid Name PPICZALPHAB


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q32 3075     complement factor H CFH    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs201671665 LS-SNP   dbSNP   A 400 Q - > K Turn 53% (Exposed) 1 196659231
    rs199705026 LS-SNP   dbSNP   A 405 K - > N Beta Ladder 71% (Exposed) 1 196659248
    rs121913056 LS-SNP   dbSNP   A 431 C - > S Beta Ladder 0% (Buried) 1 196659324
    rs200644601 LS-SNP   dbSNP   A 437 S - > Y Turn 42% (Exposed) 1 196659343