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An Information Portal to 108395 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF HUMAN SERINE THREONINE KINASE-10 BOUND TO SU11274
Biology and Chemistry Report
2J7T
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text KINASE, TRANSFERASE, ATP-BINDING, CELL CYCLE PROGRESSION, PHOSPHORYLATION, DISEASE MUTATION, NUCLEOTIDE- BINDING, LYMPHOCYTE ORIENTED KINASE (LOK), SERINE/THREONINE- PROTEIN KINASE, SERINE/THREONINE KINASE (STK10A)

    Polymeric Molecules

    Chain A
    Description SERINE/THREONINE-PROTEIN KINASE 10 
    Fragment KINASE DOMAIN, RESIDUES 18-317 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 34298.9 
    Source Method genetically manipulated  
    Entity Name LYMPHOCYTE-ORIENTED KINASE, SERINE-THREONINE PROTEIN KINASE-10 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    274  (3Z)-N-(3-CHLOROPHENYL)-3-({3,5-DIMETHYL-4-[(4-METHYLPIPERAZIN-1-YL)CARBONYL]-1H-PYRROL-2-YL}METHYLENE)-N-METHYL-2-OXOINDOLINE-5-SULFONAMIDE  C28 H30 Cl N5 O4 S   568.09  View 
    ACT  ACETATE ION  C2 H3 O2   59.04  View 
    CA  CALCIUM ION  Ca   40.08  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A STK10_HUMAN O94804     

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    2.7.11.1        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    9966   Regulation of Signal Transduction  Any Process That Modulates the Frequency Rate or Extent of Signal Transduction. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4674   Protein Serine/threonine Kinase Activity  Catalysis of the Reactions: ATP + Protein Serine = Adp + Protein Serine Phosphate and ATP + Protein Threonine = Adp + Protein Threonine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Plasmid Name PNIC28-BSA4


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    5 5q35.1 6793     serine/threonine kinase 10 STK10    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs147874779 LS-SNP   dbSNP   A 26 V - > I Coil 35% (Intermediate) 5 171614971
    rs144580417 LS-SNP   dbSNP   A 35 V - > M Turn 21% (Intermediate) 5 171614944
    rs142625010 LS-SNP   dbSNP   A 93 I - > V Beta 0% (Buried) 5 171583672
    rs200140264 LS-SNP   dbSNP   A 110 I - > T Beta Ladder 18% (Intermediate) 5 171554418 274
    rs149323437 LS-SNP   dbSNP   A 118 V - > M Helix 0% (Buried) 5 171554395
    rs72841792 LS-SNP   dbSNP   A 130 T - > K Coil 41% (Exposed) 5 171544616
    rs142301756 LS-SNP   dbSNP   A 165 M - > I Beta Ladder 0% (Buried) 5 171544510
    rs201303206 LS-SNP   dbSNP   A 196 P - > L 3/10 Helix 65% (Exposed) 5 171534790
    rs2306961 LS-SNP   dbSNP   A 210 K - > N Turn 22% (Intermediate) 5 171533782
    rs143842877 LS-SNP   dbSNP   A 222 S - > F Helix 23% (Intermediate) 5 171533747
    rs201487887 LS-SNP   dbSNP   A 225 I - > V Helix 20% (Intermediate) 5 171533739
    rs180852802 LS-SNP   dbSNP   A 237 H - > Q Turn 18% (Intermediate) 5 171533701
    rs201471238 LS-SNP   dbSNP   A 244 R - > L Helix 64% (Exposed) 5 171533681
    rs150004028 LS-SNP   dbSNP   A 253 D - > E Coil 87% (Exposed) 5 171533653
    rs142144816 LS-SNP   dbSNP   A 268 R - > H Helix 38% (Exposed) 5 171532727
    rs35826078 LS-SNP   dbSNP   A 268 R - > C Helix 38% (Exposed) 5 171532728
    rs202191993 LS-SNP   dbSNP   A 284 S - > T Coil 14% (Intermediate) 5 171532679
    rs139973473 LS-SNP   dbSNP   A 286 A - > T Helix 43% (Exposed) 5 171532674
    rs146021633 LS-SNP   dbSNP   A 296 S - > N Turn 75% (Exposed) 5 171523548