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An Information Portal to 105212 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF HUMAN SERINE THREONINE KINASE-10 BOUND TO SU11274
Biology and Chemistry Report
2J7T
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text KINASE, TRANSFERASE, ATP-BINDING, CELL CYCLE PROGRESSION, PHOSPHORYLATION, DISEASE MUTATION, NUCLEOTIDE- BINDING, LYMPHOCYTE ORIENTED KINASE (LOK), SERINE/THREONINE- PROTEIN KINASE, SERINE/THREONINE KINASE (STK10A)

    Polymeric Molecules

    Chain A
    Description SERINE/THREONINE-PROTEIN KINASE 10 
    Fragment KINASE DOMAIN, RESIDUES 18-317 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 34298.9 
    Source Method genetically manipulated  
    Entity Name LYMPHOCYTE-ORIENTED KINASE, SERINE-THREONINE PROTEIN KINASE-10 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    274  (3Z)-N-(3-CHLOROPHENYL)-3-({3,5-DIMETHYL-4-[(4-METHYLPIPERAZIN-1-YL)CARBONYL]-1H-PYRROL-2-YL}METHYLENE)-N-METHYL-2-OXOINDOLINE-5-SULFONAMIDE  C28 H30 Cl N5 O4 S   568.09  View 
    ACT  ACETATE ION  C2 H3 O2   59.04  View 
    CA  CALCIUM ION  Ca   40.08  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A STK10_HUMAN A6ND35     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    2.7.11.1        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4674   Protein Serine/threonine Kinase Activity  Catalysis of the Reactions: ATP + Protein Serine = Adp + Protein Serine Phosphate and ATP + Protein Threonine = Adp + Protein Threonine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Plasmid Name PNIC28-BSA4


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    5 5q35.1 6793     serine/threonine kinase 10 STK10    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs147874779 LS-SNP   dbSNP   A 26 V - > I Coil 35% (Intermediate) 5 171614971
    rs144580417 LS-SNP   dbSNP   A 35 V - > M Turn 21% (Intermediate) 5 171614944
    rs142625010 LS-SNP   dbSNP   A 93 I - > V Beta 0% (Buried) 5 171583672
    rs200140264 LS-SNP   dbSNP   A 110 I - > T Beta Ladder 18% (Intermediate) 5 171554418 274
    rs149323437 LS-SNP   dbSNP   A 118 V - > M Helix 0% (Buried) 5 171554395
    rs72841792 LS-SNP   dbSNP   A 130 T - > K Coil 41% (Exposed) 5 171544616
    rs142301756 LS-SNP   dbSNP   A 165 M - > I Beta Ladder 0% (Buried) 5 171544510
    rs201303206 LS-SNP   dbSNP   A 196 P - > L 3/10 Helix 65% (Exposed) 5 171534790
    rs2306961 LS-SNP   dbSNP   A 210 K - > N Turn 22% (Intermediate) 5 171533782
    rs143842877 LS-SNP   dbSNP   A 222 S - > F Helix 23% (Intermediate) 5 171533747
    rs201487887 LS-SNP   dbSNP   A 225 I - > V Helix 20% (Intermediate) 5 171533739
    rs180852802 LS-SNP   dbSNP   A 237 H - > Q Turn 18% (Intermediate) 5 171533701
    rs201471238 LS-SNP   dbSNP   A 244 R - > L Helix 64% (Exposed) 5 171533681
    rs150004028 LS-SNP   dbSNP   A 253 D - > E Coil 87% (Exposed) 5 171533653
    rs142144816 LS-SNP   dbSNP   A 268 R - > H Helix 38% (Exposed) 5 171532727
    rs35826078 LS-SNP   dbSNP   A 268 R - > C Helix 38% (Exposed) 5 171532728
    rs202191993 LS-SNP   dbSNP   A 284 S - > T Coil 14% (Intermediate) 5 171532679
    rs139973473 LS-SNP   dbSNP   A 286 A - > T Helix 43% (Exposed) 5 171532674
    rs146021633 LS-SNP   dbSNP   A 296 S - > N Turn 75% (Exposed) 5 171523548