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CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AEE788
Biology and Chemistry Report
2J6M
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text CELL CYCLE, ATP-BINDING, TRANSFERASE, NUCLEOTIDE-BINDING, TYROSINE-PROTEIN KINASE, EPIDERMAL GROWTH FACTOR, PHOSPHORYLATION, DISEASE MUTATION, GLYCOPROTEIN, ANTI-ONCOGENE, TRANSMEMBRANE, EGFR, KINASE, AEE788, MEMBRANE, RECEPTOR, WILD-TYPE

    Polymeric Molecules

    Chain A
    Description EPIDERMAL GROWTH FACTOR RECEPTOR 
    Fragment KINASE DOMAIN, RESIDUES 696-1022 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 37304.4 
    Source Method genetically manipulated  
    Entity Name RECEPTOR TYROSINE-PROTEIN KINASE ERBB-1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    AEE  6-{4-[(4-ETHYLPIPERAZIN-1-YL)METHYL]PHENYL}-N-[(1R)-1-PHENYLETHYL]-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE  C27 H32 N6   440.58  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A EGFR_HUMAN O00688     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    2.7.10.1        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4713   Protein Tyrosine Kinase Activity  Catalysis of the Reaction: ATP + a Protein Tyrosine = Adp + Protein Tyrosine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Spodoptera frugiperda  
    Host Cell Line Sf9
    Host Vector Type Baculovirus
    Host Plasmid Name PACG2T
    Description Egfr 696 1022 Wild Type


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    7 7p12 1956     epidermal growth factor receptor EGFR    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs28929495 LS-SNP   dbSNP   A 719 G - > CS Beta Ladder 33% (Intermediate) 7 55241707
    rs121913428 LS-SNP   dbSNP   A 719 G - > AD Beta Ladder 33% (Intermediate) 7 55241708
    rs138240620 LS-SNP   dbSNP   A 727 Y - > C Beta Ladder 22% (Intermediate) 7 55241732
    rs121913434 LS-SNP   dbSNP   A 730 L - > F Beta Ladder 15% (Intermediate) 7 55242418
    rs121913446 LS-SNP   dbSNP   A 733 P - > L Coil 0% (Buried) 7 55242428
    rs121913420 LS-SNP   dbSNP   A 734 E - > K Turn 71% (Exposed) 7 55242430
    rs121913430 LS-SNP   dbSNP   A 735 G - > S Turn 88% (Exposed) 7 55242433
    rs121913466 LS-SNP   dbSNP   A 742 V - > A Beta Ladder 0% (Buried) 7 55242455
    rs121913433 LS-SNP   dbSNP   A 745 K - > R Beta Ladder 20% (Intermediate) 7 55242464 AEE
    rs121913427 LS-SNP   dbSNP   A 746 E - > K Beta Ladder 10% (Intermediate) 7 55242466
    rs121913229 LS-SNP   dbSNP   A 750 A - > P Bend 62% (Exposed) 7 55242478
    rs121913464 LS-SNP   dbSNP   A 752 S - > Y Coil 34% (Intermediate) 7 55242485
    rs121913231 LS-SNP   dbSNP   A 753 P - > S Helix 79% (Exposed) 7 55242487
    rs121913418 LS-SNP   dbSNP   A 761 D - > NY Helix 40% (Exposed) 7 55242511
    rs121913465 LS-SNP   dbSNP   A 768 S - > I Bend 11% (Intermediate) 7 55249005
    rs147149347 LS-SNP   dbSNP   A 769 V - > M Coil 3% (Buried) 7 55249007
    rs121913432 LS-SNP   dbSNP   A 773 H - > R Turn 14% (Intermediate) 7 55249020
    rs121434569 LS-SNP   dbSNP   A 790 T - > M Beta Ladder 16% (Intermediate) 7 55249071 AEE
    rs121913431 LS-SNP   dbSNP   A 810 G - > D Coil 19% (Intermediate) 7 55249131
    rs121913230 LS-SNP   dbSNP   A 810 G - > S Coil 19% (Intermediate) 7 55249130
    rs150749913 LS-SNP   dbSNP   A 827 Y - > F Helix 17% (Intermediate) 7 55259422
    rs150036236 LS-SNP   dbSNP   A 831 R - > H Turn 33% (Intermediate) 7 55259434
    rs146121458 LS-SNP   dbSNP   A 836 R - > H Bend 12% (Intermediate) 7 55259449
    rs143884981 LS-SNP   dbSNP   A 840 A - > T 3/10 Helix 0% (Buried) 7 55259460
    rs146795390 LS-SNP   dbSNP   A 843 V - > I Beta Ladder 0% (Buried) 7 55259469
    rs148934350 LS-SNP   dbSNP   A 848 P - > L Turn 20% (Intermediate) 7 55259485
    rs121913443 LS-SNP   dbSNP   A 858 L - > M Turn 36% (Intermediate) 7 55259514
    rs121434568 LS-SNP   dbSNP   A 858 L - > R Turn 36% (Intermediate) 7 55259515
    rs121913444 LS-SNP   dbSNP   A 861 L - > Q Beta Ladder 47% (Exposed) 7 55259524
    rs104886013 LS-SNP   dbSNP   A 868 E - > K Bend 50% (Exposed) 7 55259544
    rs151064287 LS-SNP   dbSNP   A 892 T - > I Coil 19% (Intermediate) 7 55260508
    rs201830126 LS-SNP   dbSNP   A 955 A - > T Turn 17% (Intermediate) 7 55268023
    rs104886026 LS-SNP   dbSNP   A 956 D - > N Turn 75% (Exposed) 7 55268026
    rs144496976 LS-SNP   dbSNP   A 962 R - > H Helix 52% (Exposed) 7 55268045
    rs17337451 LS-SNP   dbSNP   A 962 R - > CG Helix 52% (Exposed) 7 55268044
    rs1140476 LS-SNP   dbSNP   A 977 R - > C Helix 65% (Exposed) 7 55268089
    rs148019583 LS-SNP   dbSNP   A 1009 D - > N Bend 31% (Intermediate) 7 55268959