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Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin (part 1 of 4). This file contains the 30s subunit, mrna, a-, p- and e-site trnas and paromomycin for molecule I.
Biology and Chemistry Report
2J00
  •   Structure Details   Hide

    Structure Keywords

    Keywords RIBOSOME
    Text RIBOSOME, TRNA, PAROMOMYCIN, MRNA, TRANSLATION

    Polymeric Molecules

    Chain A
    Description 16S RRNA 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 493959.0 
    Source Method synthetic  
    Chain J
    Description 30S RIBOSOMAL PROTEIN S10 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11955.1 
    Source Method natural source  
    Chain K
    Description 30S RIBOSOMAL PROTEIN S11 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13738.0 
    Source Method natural source  
    Chain L
    Description 30S RIBOSOMAL PROTEIN S12 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14920.9 
    Source Method natural source  
    Chain M
    Description 30S RIBOSOMAL PROTEIN S13 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14339.0 
    Source Method natural source  
    Chain N
    Description 30S RIBOSOMAL PROTEIN S14 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 7158.8 
    Source Method natural source  
    Chain O
    Description 30S RIBOSOMAL PROTEIN S15 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10578.5 
    Source Method natural source  
    Chain P
    Description 30S RIBOSOMAL PROTEIN S16 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10410.1 
    Source Method natural source  
    Chain Q
    Description 30S RIBOSOMAL PROTEIN S17 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 12325.8 
    Source Method natural source  
    Chain R
    Description 30S RIBOSOMAL PROTEIN S18 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10258.4 
    Source Method natural source  
    Chain S
    Description 30S RIBOSOMAL PROTEIN S19 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10605.6 
    Source Method natural source  
    Chain B
    Description 30S RIBOSOMAL PROTEIN S2 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 29317.9 
    Source Method natural source  
    Chain T
    Description 30S RIBOSOMAL PROTEIN S20 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11736.2 
    Source Method natural source  
    Chain U
    Description 30S RIBOSOMAL PROTEIN THX 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 3350.1 
    Source Method natural source  
    Chain V
    Description P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polyribonucleotide 
    Formula Weight 24817.0 
    Source Method synthetic  
    Chain W,Y
    Description E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 24485.7 
    Source Method synthetic  
    Chain X
    Description MRNA 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 7827.8 
    Source Method synthetic  
    Chain C
    Description 30S RIBOSOMAL PROTEIN S3 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 26751.3 
    Source Method natural source  
    Chain D
    Description 30S RIBOSOMAL PROTEIN S4 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 24373.6 
    Source Method natural source  
    Chain E
    Description 30S RIBOSOMAL PROTEIN S5 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17583.6 
    Source Method natural source  
    Chain F
    Description 30S RIBOSOMAL PROTEIN S6 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11988.9 
    Source Method natural source  
    Entity Name TS9 
    Chain G
    Description 30S RIBOSOMAL PROTEIN S7 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 18051.1 
    Source Method natural source  
    Chain H
    Description 30S RIBOSOMAL PROTEIN S8 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 15868.7 
    Source Method natural source  
    Chain I
    Description 30S RIBOSOMAL PROTEIN S9 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14429.8 
    Source Method natural source  

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)

     
  •   Gene Details   Hide

    Natural Source

    Chain W,Y
    Scientific Name Escherichia coli  
    Strain K12
    Chain V
    Scientific Name Escherichia coli  
    Strain K12
    Chain U
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain T
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain S
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain R
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain Q
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain P
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain O
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain N
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain M
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain A
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain B
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain C
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain D
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain E
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain F
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain G
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain H
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain I
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain J
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain K
    Scientific Name Thermus thermophilus  
    Strain HB8
    Chain L
    Scientific Name Thermus thermophilus  
    Strain HB8

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    - - 3167932     30S ribosomal protein S10 RPSJ    
    - - 3168024     30S ribosomal protein S11 TTHA1666    
    - - 3167962     30S ribosomal protein S13 RPSM    
    - - 3169802     30S ribosomal protein S14 RPSN    
    - - 3169463     30S ribosomal protein S15 RPSO    
    - - 3170114     30S ribosomal protein S16 RPSP    
    - - 3169831     30S ribosomal protein S17 RPSQ    
    - - 3169870     30S ribosomal protein S18 RPSR    
    - - 3167860     30S ribosomal protein S19 RPSS    
    - - 3168087     30S ribosomal protein S20 RPST    
    - - 3168745     30S ribosomal protein Thx TTHA1396    
    - - 3170121     30S ribosomal protein S2 RPSB    
    - - 3168725     30S ribosomal protein S3 RPSC    
    - - 3168006     30S ribosomal protein S4 RPSD    
    - - 3169827     30S ribosomal protein S5 RPSE    
    - - 3168355     30S ribosomal protein S6 RPSF    
    - - 3167931     30S ribosomal protein S7 TTHA1696    
    - - 3169811     30S ribosomal protein S8 RPSH