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Karyopherin Beta2/Transportin-M9NLS
Biology and Chemistry Report
2H4M
  •   Structure Details   Hide

    Structure Keywords

    Keywords PROTEIN TRANSPORT
    Text HEAT Repeat, Nuclear import complex, PROTEIN TRANSPORT

    Polymeric Molecules

    Chain A,B
    Description Transportin-1 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 98024.9 
    Source Method genetically manipulated  
    Entity Name Importin beta-2, Karyopherin beta-2, M9 region interaction protein, MIP 
    Chain C,D
    Description HNRPA1 protein 
    Fragment RESIDUES: 257-305 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 5078.3 
    Source Method genetically manipulated  
    Entity Name Fragment 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B TNPO1_HUMAN B4DVC6     
    C,D ROA1_HUMAN P09651     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6886   Intracellular Protein Transport  The Directed Movement of Proteins in a Cell Including the Movement of Proteins Between Specific Compartments or Structures Within a Cell Such As Organelles of a Eukaryotic Cell. 
    8536   Ran Gtpase Binding  Interacting Selectively and Non Covalently with Ran a Conserved Ras Like GTP Binding Protein Implicated in Nucleocytoplasmic Transport Cell Cycle Progression Spindle Assembly Nuclear Organization and Nuclear Envelope (ne) Assembly. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain C,D
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene hnrpa1
    Host Scientific Name Escherichia coli bl21  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Strain Bl21


    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene tnpo1, kpnb2, mip1, trn
    Host Scientific Name Escherichia coli bl21  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Strain Bl21


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    5 5q13.2 3842     transportin 1 TNPO1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs25661 LS-SNP   dbSNP   A 26 D - > E Turn 11% (Intermediate) 5 72144298
    rs112893057 LS-SNP   dbSNP   A 102 S - > T Bend 77% (Exposed) 5 72151723
    rs200627642 LS-SNP   dbSNP   A 108 A - > V Helix 58% (Exposed) 5 72151742
    rs200553704 LS-SNP   dbSNP   A 119 S - > F Helix 52% (Exposed) 5 72157659
    rs41271137 LS-SNP   dbSNP   A 155 I - > F Helix 13% (Intermediate) 5 72161447
    rs113424229 LS-SNP   dbSNP   A 174 I - > V Helix 57% (Exposed) 5 72161504
    rs149944168 LS-SNP   dbSNP   A 215 S - > C Helix 33% (Intermediate) 5 72168537
    rs1135608 LS-SNP   dbSNP   A 217 I - > T Helix 4% (Buried) 5 72168543
    rs74481451 LS-SNP   dbSNP   A 285 E - > D Turn 40% (Exposed) 5 72173132
    rs144997390 LS-SNP   dbSNP   A 287 P - > R Turn 82% (Exposed) 5 72173137
    rs201671324 LS-SNP   dbSNP   A 289 C - > R Helix 0% (Buried) 5 72173142
    rs200584417 LS-SNP   dbSNP   A 298 P - > S Helix 57% (Exposed) 5 72173169
    rs142209295 LS-SNP   dbSNP   A 397 H - > R Helix 32% (Intermediate) 5 72182960
    rs140476981 LS-SNP   dbSNP   A 400 P - > A Helix 64% (Exposed) 5 72182968
    rs138270381 LS-SNP   dbSNP   A 454 V - > L Helix 0% (Buried) 5 72183985
    rs140988378 LS-SNP   dbSNP   A 476 T - > M Turn 49% (Exposed) 5 72184052
    rs150255663 LS-SNP   dbSNP   A 488 R - > C Helix 17% (Intermediate) 5 72184087
    rs138674722 LS-SNP   dbSNP   A 575 M - > T Helix 58% (Exposed) 5 72187683
    rs201811400 LS-SNP   dbSNP   A 594 A - > T Helix 1% (Buried) 5 72188981
    rs200521874 LS-SNP   dbSNP   A 686 S - > C Helix 2% (Buried) 5 72189467
    rs199950184 LS-SNP   dbSNP   A 744 Q - > R 3/10 Helix 42% (Exposed) 5 72192895
    rs201701131 LS-SNP   dbSNP   A 821 I - > T Helix 2% (Buried) 5 72196872
    rs113153605 LS-SNP   dbSNP   A 839 V - > I Helix 0% (Buried) 5 72199560
    rs200917341 LS-SNP   dbSNP   A 868 N - > Y Helix 53% (Exposed) 5 72201166
    rs1804722 LS-SNP   dbSNP   A 873 S - > F Turn 7% (Buried) 5 72201182
    rs3197396 LS-SNP   dbSNP   C 272 N - > I Coil 45% (Exposed) 12 54677659
    rs3207617 LS-SNP   dbSNP   C 280 N - > I Turn 73% (Exposed) 13 53217466