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Crystal Structure of the inactive EGFR kinase domain in complex with AMP-PNP
Biology and Chemistry Report
2GS7
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text EGFR, kinase, inactive, AMP-PNP, TRANSFERASE

    Polymeric Molecules

    Chain A,B
    Description Epidermal growth factor receptor 
    Fragment kinase domain, residues 696-1022 
    Mutation V924R 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 37621.8 
    Source Method genetically manipulated  
    Entity Name Receptor tyrosine-protein kinase ErbB-1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ANP  PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER  C10 H17 N6 O12 P3   506.20  View 
    IOD  IODIDE ION  I   126.90  View 
    MG  MAGNESIUM ION  Mg   24.31  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B EGFR_HUMAN O00688     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    A B  2.7.10.1        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4713   Protein Tyrosine Kinase Activity  Catalysis of the Reaction: ATP + a Protein Tyrosine = Adp + Protein Tyrosine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene egfr, erbb1
    Host Common Name Fall Armyworm
    Host Scientific Name Spodoptera frugiperda  
    Host Genus Spodoptera
    Host Strain Sf9
    Host Vector Type Baculorvirus
    Host Plasmid Name pFASTBAC-HT


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    7 7p12 1956     epidermal growth factor receptor EGFR    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs28929495 LS-SNP   dbSNP   A 695 G - > CS Beta Ladder 43% (Exposed) 7 55241707 ANP
    rs121913428 LS-SNP   dbSNP   A 695 G - > AD Beta Ladder 43% (Exposed) 7 55241708 ANP
    rs138240620 LS-SNP   dbSNP   A 703 Y - > C Beta Ladder 22% (Intermediate) 7 55241732
    rs121913434 LS-SNP   dbSNP   A 706 L - > F Beta Ladder 1% (Buried) 7 55242418 IOD
    rs121913446 LS-SNP   dbSNP   A 709 P - > L Coil 4% (Buried) 7 55242428
    rs121913420 LS-SNP   dbSNP   A 710 E - > K Bend 57% (Exposed) 7 55242430
    rs121913430 LS-SNP   dbSNP   A 711 G - > S Bend 93% (Exposed) 7 55242433
    rs121913466 LS-SNP   dbSNP   A 718 V - > A Beta Ladder 0% (Buried) 7 55242455
    rs121913433 LS-SNP   dbSNP   A 721 K - > R Beta Ladder 25% (Intermediate) 7 55242464 MG,ANP
    rs121913427 LS-SNP   dbSNP   A 722 E - > K Beta Ladder 21% (Intermediate) 7 55242466
    rs121913229 LS-SNP   dbSNP   A 726 A - > P Turn 83% (Exposed) 7 55242478
    rs121913464 LS-SNP   dbSNP   A 728 S - > Y Coil 20% (Intermediate) 7 55242485
    rs121913231 LS-SNP   dbSNP   A 729 P - > S Bend 41% (Exposed) 7 55242487
    rs121913418 LS-SNP   dbSNP   A 737 D - > NY Helix 63% (Exposed) 7 55242511
    rs121913465 LS-SNP   dbSNP   A 744 S - > I Turn 20% (Intermediate) 7 55249005
    rs147149347 LS-SNP   dbSNP   A 745 V - > M Coil 1% (Buried) 7 55249007
    rs121913432 LS-SNP   dbSNP   A 749 H - > R Turn 12% (Intermediate) 7 55249020 IOD
    rs121434569 LS-SNP   dbSNP   A 766 T - > M Beta Ladder 25% (Intermediate) 7 55249071 ANP
    rs121913431 LS-SNP   dbSNP   A 786 G - > D Coil 42% (Exposed) 7 55249131
    rs121913230 LS-SNP   dbSNP   A 786 G - > S Coil 42% (Exposed) 7 55249130
    rs150749913 LS-SNP   dbSNP   A 803 Y - > F Helix 21% (Intermediate) 7 55259422
    rs150036236 LS-SNP   dbSNP   A 807 R - > H Turn 38% (Exposed) 7 55259434
    rs146121458 LS-SNP   dbSNP   A 812 R - > H Bend 10% (Intermediate) 7 55259449 IOD
    rs143884981 LS-SNP   dbSNP   A 816 A - > T 3/10 Helix 0% (Buried) 7 55259460
    rs146795390 LS-SNP   dbSNP   A 819 V - > I Beta Ladder 0% (Buried) 7 55259469
    rs148934350 LS-SNP   dbSNP   A 824 P - > L Turn 2% (Buried) 7 55259485 IOD
    rs121913443 LS-SNP   dbSNP   A 834 L - > M Helix 6% (Buried) 7 55259514
    rs121434568 LS-SNP   dbSNP   A 834 L - > R Helix 6% (Buried) 7 55259515
    rs121913444 LS-SNP   dbSNP   A 837 L - > Q Helix 2% (Buried) 7 55259524
    rs104886013 LS-SNP   dbSNP   A 844 E - > K Bend 46% (Exposed) 7 55259544
    rs151064287 LS-SNP   dbSNP   A 868 T - > I Coil 37% (Exposed) 7 55260508
    rs201830126 LS-SNP   dbSNP   A 931 A - > T 3/10 Helix 24% (Intermediate) 7 55268023
    rs104886026 LS-SNP   dbSNP   A 932 D - > N 3/10 Helix 79% (Exposed) 7 55268026
    rs144496976 LS-SNP   dbSNP   A 938 R - > H Helix 50% (Exposed) 7 55268045
    rs17337451 LS-SNP   dbSNP   A 938 R - > CG Helix 50% (Exposed) 7 55268044
    rs1140476 LS-SNP   dbSNP   A 953 R - > C Helix 61% (Exposed) 7 55268089
    rs148019583 LS-SNP   dbSNP   A 985 D - > N Coil 51% (Exposed) 7 55268959