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A novel anti-adipogenic partial agonist of peroxisome proliferator-activated receptor-gamma (PPARG) recruits pparg-coactivator-1 alpha (PGC1A) but potentiates insulin signaling in vitro
Biology and Chemistry Report
2FVJ
  •   Structure Details   Hide

    Structure Keywords

    Keywords SIGNALING PROTEIN
    Text Nuclear Receptor LBD, Alpha Helical Sandwich, SIGNALING PROTEIN

    Polymeric Molecules

    Chain A
    Description Peroxisome proliferator-activated receptor gamma 
    Fragment LIGAND BINDING DOMAIN, RESIDUES 207-477 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 30997.3 
    Source Method genetically manipulated  
    Entity Name PPAR-gamma 
    Chain B
    Description Nuclear receptor coactivator 1 
    Fragment COACTIVATOR FRAGMENT SRC-1, 13-mer peptide from Nuclear receptor coactivator 1 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 1471.7 
    Source Method genetically manipulated  
    Entity Name NCoA-1, Steroid receptor coactivator-1, SRC-1, RIP160, Hin-2 protein 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    RO0  1-(3,4-DIMETHOXYBENZYL)-6,7-DIMETHOXY-4-{[4-(2-METHOXYPHENYL)PIPERIDIN-1-YL]METHYL}ISOQUINOLINE  C33 H38 N2 O5   542.67  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A PPARG_HUMAN A8K3G6     
    B NCOA1_HUMAN O00150     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.3.1.48      
     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia


    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    2 2p23 8648     nuclear receptor coactivator 1 NCOA1    
    3 3p25 5468     peroxisome proliferator-activated receptor gamma PPARG    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs150296212 LS-SNP   dbSNP   A 212 R - > Q Helix 37% (Exposed) 3 12447480
    rs76480583 LS-SNP   dbSNP   A 238 T - > K Helix 63% (Exposed) 3 12447558
    rs200116144 LS-SNP   dbSNP   A 246 P - > L Coil 19% (Intermediate) 3 12458204
    rs147996578 LS-SNP   dbSNP   A 248 V - > I Beta Ladder 48% (Exposed) 3 12458209
    rs111400984 LS-SNP   dbSNP   A 281 I - > T Helix 14% (Intermediate) 3 12458309 RO0
    rs121909242 LS-SNP   dbSNP   A 286 Q - > P Helix 6% (Buried) 3 12458324 RO0
    rs28936407 LS-SNP   dbSNP   A 288 R - > H Helix 39% (Exposed) 3 12458330 RO0
    rs72551362 LS-SNP   dbSNP   A 290 V - > M Helix 8% (Buried) 3 12458335
    rs139894525 LS-SNP   dbSNP   A 307 V - > L 3/10 Helix 56% (Exposed) 3 12458386
    rs145566594 LS-SNP   dbSNP   A 328 T - > P Helix 0% (Buried) 3 12458449
    rs141683496 LS-SNP   dbSNP   A 343 E - > K Turn 56% (Exposed) 3 12458494
    rs140204299 LS-SNP   dbSNP   A 357 R - > Q Coil 35% (Intermediate) 3 12458537
    rs188622140 LS-SNP   dbSNP   A 360 F - > C 3/10 Helix 4% (Buried) 3 12458546 RO0
    rs72551363 LS-SNP   dbSNP   A 360 F - > L 3/10 Helix 4% (Buried) 3 12458547 RO0
    rs148844673 LS-SNP   dbSNP   A 382 S - > R Helix 21% (Intermediate) 3 12458613
    rs72551364 LS-SNP   dbSNP   A 397 R - > C Bend 3% (Buried) 3 12475399
    rs186728157 LS-SNP   dbSNP   A 427 E - > A Turn 96% (Exposed) 3 12475490
    rs62243567 LS-SNP   dbSNP   A 449 H - > N Helix 8% (Buried) 3 12475555 RO0
    rs201781800 LS-SNP   dbSNP   A 459 T - > M Helix 66% (Exposed) 3 12475586
    rs121909244 LS-SNP   dbSNP   A 467 P - > L Helix 41% (Exposed) 3 12475610