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Solution structure of the second fn3 domain from human Ephrin type-B receptor 4
Biology and Chemistry Report
2E7H
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE, SIGNALING PROTEIN
    Text FN3 domain, Ephrin type-B receptor 4 precursor, Tyrosine-protein kinase receptor HTK, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE, SIGNALING PROTEIN

    Polymeric Molecules

    Chain A
    Description Ephrin type-B receptor 4 
    Fragment FN3 domain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11458.7 
    Source Method genetically manipulated  
    Entity Name Tyrosine-protein kinase receptor HTK 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A EPHB4_HUMAN P54760     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.10.1      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene ephb4, htk
    Host Vector Type Plasmid
    Host Plasmid Name P050919-21
    Description Cell Free Protein Synthesis


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    7 7q22 2050     EPH receptor B4 EPHB4    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs74779801 LS-SNP   dbSNP   A 5 R - > P Coil 70% (Exposed) 7 100417184
    rs183759430 LS-SNP   dbSNP   A 17 T - > M Beta Ladder 70% (Exposed) 7 100416236
    rs146064780 LS-SNP   dbSNP   A 18 R - > L Beta Ladder 100% (Exposed) 7 100416233
    rs138234752 LS-SNP   dbSNP   A 27 A - > T Beta Ladder 25% (Intermediate) 7 100416207
    rs150425369 LS-SNP   dbSNP   A 27 A - > V Beta Ladder 25% (Intermediate) 7 100416206
    rs141544967 LS-SNP   dbSNP   A 32 R - > W Coil 102% (Exposed) 7 100416192
    rs146674844 LS-SNP   dbSNP   A 36 G - > R Bend 94% (Exposed) 7 100416180
    rs7457245 LS-SNP   dbSNP   A 37 A - > D Coil 54% (Exposed) 7 100416176
    rs3891495 LS-SNP   dbSNP   A 45 Y - > D Beta Ladder 16% (Intermediate) 7 100416153
    rs149712104 LS-SNP   dbSNP   A 46 H - > Y Beta Ladder 27% (Intermediate) 7 100416150
    rs147737164 LS-SNP   dbSNP   A 66 A - > T Beta Ladder 8% (Buried) 7 100414928
    rs200691435 LS-SNP   dbSNP   A 69 R - > Q Beta Ladder 96% (Exposed) 7 100414918
    rs146937374 LS-SNP   dbSNP   A 83 A - > G Beta Ladder 1% (Buried) 7 100414876
    rs149690566 LS-SNP   dbSNP   A 107 G - > V Coil 93% (Exposed) 7 100411634
    rs139594739 LS-SNP   dbSNP   A 109 R - > Q Coil 136% (Exposed) 7 100411628