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Insulin receptor (IR) ectodomain in complex with fab's
Biology and Chemistry Report
2DTG
  •   Structure Details   Hide

    Structure Keywords

    Keywords HORMONE RECEPTOR/IMMUNE SYSTEM
    Text INSULIN RECEPTOR; IR ECTODOMAIN; X-RAY CRYSTALLOGRAPHY, HORMONE RECEPTOR-IMMUNE SYSTEM COMPLEX

    Polymeric Molecules

    Chain A
    Description FAB 83-7 HEAVY CHAIN 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 23517.5 
    Source Method genetically manipulated  
    Chain B
    Description FAB 83-7 LIGHT CHAIN 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 24328.2 
    Source Method genetically manipulated  
    Chain C
    Description FAB 83-14 HEAVY CHAIN 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 23136.2 
    Source Method genetically manipulated  
    Chain D
    Description FAB 83-14 LIGHT CHAIN 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 23525.1 
    Source Method genetically manipulated  
    Chain E
    Description Insulin receptor 
    Fragment INSULIN RECEPTOR ECTODOMAIN 
    Mutation Y144H/V731A/T732G/V733N/A734N 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 102782.0 
    Source Method genetically manipulated  

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    E INSR_HUMAN P06213     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.10.1      

    Immune Epitopes (B-cell and T-Cell)

    Immune Epitope Database (IEDB)
    Epitope ID 134841    
    Epitope ID 177400    
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain E
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    7169   Transmembrane Receptor Protein Tyrosine Kinase Signaling Pathway  A Series of Molecular Signals Initiated by the Binding of an Extracellular Ligand to a Receptor On the Surface of the Target Cell Where the Receptor Possesses Tyrosine Kinase Activity and Ending with Regulation of a Downstream Cellular Process E.g. Transcription. 
    16020   Membrane  Double Layer of Lipid Molecules That Encloses All Cells and in Eukaryotes Many Organelles; May Be a Single or Double Lipid Bilayer; Also Includes Associated Proteins. 
    4714   Transmembrane Receptor Protein Tyrosine Kinase Activity  Combining with a Signal and Transmitting the Signal From One Side of the Membrane to the Other to Initiate a Change in Cell Activity by Catalysis of the Reaction: ATP + a Protein L Tyrosine = Adp + a Protein L Tyrosine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain E
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Host Common Name Chinese Hamster
    Host Scientific Name Cricetulus griseus  
    Host Genus Cricetulus
    Host Cell Type Cho
    Host Cell Line Lec8 Mutant


    Chain D
    Common Name House Mouse
    Scientific Name Mus musculus  
    Genus Mus
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Vector Type Plasmid
    Host Plasmid Name pEE14


    Chain C
    Common Name House Mouse
    Scientific Name Mus musculus  
    Genus Mus
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Vector Type Plasmid
    Host Plasmid Name pEE14


    Chain B
    Common Name House Mouse
    Scientific Name Mus musculus  
    Genus Mus
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Vector Type Plasmid
    Host Plasmid Name pEE14


    Chain A
    Common Name House Mouse
    Scientific Name Mus musculus  
    Genus Mus
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Vector Type Plasmid
    Host Plasmid Name pEE14


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    19 19p13.3-p13.2 3643     insulin receptor INSR    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs121913143 LS-SNP   dbSNP   E 15 N - > K Bend 58% (Exposed) 19 7267882
    rs144718517 LS-SNP   dbSNP   E 16 N - > S Bend 56% (Exposed) 19 7267880
    rs140852238 LS-SNP   dbSNP   E 24 E - > K Bend 52% (Exposed) 19 7267857
    rs121913152 LS-SNP   dbSNP   E 28 V - > A Beta Ladder 1% (Buried) 19 7267844
    rs52836744 LS-SNP   dbSNP   E 31 G - > *R Beta Ladder 10% (Intermediate) 19 7267836
    rs78827745 LS-SNP   dbSNP   E 38 M - > K Beta 0% (Buried) 19 7267814
    rs142910337 LS-SNP   dbSNP   E 48 D - > G Turn 61% (Exposed) 19 7267784
    rs148554947 LS-SNP   dbSNP   E 55 I - > T Coil 13% (Intermediate) 19 7267763
    rs140762552 LS-SNP   dbSNP   E 80 T - > M Coil 4% (Buried) 19 7267688
    rs121913153 LS-SNP   dbSNP   E 86 R - > P Bend 58% (Exposed) 19 7267670
    rs121913159 LS-SNP   dbSNP   E 119 I - > M Beta Ladder 0% (Buried) 19 7267570
    rs140955974 LS-SNP   dbSNP   E 134 S - > F Helix 55% (Exposed) 19 7267526
    rs1051692 LS-SNP   dbSNP   E 144 Y - > H Beta Ladder 39% (Exposed) 19 7267497
    rs147233169 LS-SNP   dbSNP   E 145 I - > N Beta Ladder 32% (Intermediate) 19 7267493
    rs143919163 LS-SNP   dbSNP   E 165 G - > D Bend 85% (Exposed) 19 7267433
    rs199659271 LS-SNP   dbSNP   E 192 C - > R Coil 0% (Buried) 19 7184646
    rs121913145 LS-SNP   dbSNP   E 209 H - > R Coil 14% (Intermediate) 19 7184594
    rs121913141 LS-SNP   dbSNP   E 233 L - > P Beta 5% (Buried) 19 7184522
    rs891087 LS-SNP   dbSNP   E 234 D - > E Turn 30% (Intermediate) 19 7184518
    rs141484557 LS-SNP   dbSNP   E 235 G - > S Turn 23% (Intermediate) 19 7184517
    rs200199169 LS-SNP   dbSNP   E 244 P - > L Bend 34% (Intermediate) 19 7184489
    rs144645940 LS-SNP   dbSNP   E 265 K - > Q Coil 80% (Exposed) 19 7184427
    rs201147780 LS-SNP   dbSNP   E 267 K - > R Coil 96% (Exposed) 19 7184420
    rs138528064 LS-SNP   dbSNP   E 293 T - > M Beta Ladder 29% (Intermediate) 19 7184342
    rs55816055 LS-SNP   dbSNP   E 326 S - > P Helix 7% (Buried) 19 7174660
    rs72549237 LS-SNP   dbSNP   E 335 V - > I Beta Ladder 18% (Intermediate) 19 7174633
    rs144929085 LS-SNP   dbSNP   E 375 A - > P Turn 33% (Intermediate) 19 7172365
    rs121913142 LS-SNP   dbSNP   E 382 F - > V 3/10 Helix 2% (Buried) 19 7172344
    rs181150880 LS-SNP   dbSNP   E 383 R - > Q Turn 51% (Exposed) 19 7172340
    rs200059069 LS-SNP   dbSNP   E 384 K - > Q Turn 41% (Exposed) 19 7172338
    rs79312957 LS-SNP   dbSNP   E 386 R - > C Coil 48% (Exposed) 19 7172332
    rs121913158 LS-SNP   dbSNP   E 412 W - > S Coil 1% (Buried) 19 7170715
    rs1051691 LS-SNP   dbSNP   E 421 I - > T Coil 3% (Buried) 19 7170688
    rs121913160 LS-SNP   dbSNP   E 431 N - > D Beta 0% (Buried) 19 7170659
    rs121913136 LS-SNP   dbSNP   E 460 K - > E Turn 89% (Exposed) 19 7170572
    rs121913147 LS-SNP   dbSNP   E 462 N - > S Beta 1% (Buried) 19 7170565
    rs1131851 LS-SNP   dbSNP   E 465 Q - > K Turn 71% (Exposed) 19 7170557
    rs147671523 LS-SNP   dbSNP   E 490 E - > G Coil 14% (Intermediate) 19 7168039
    rs201978448 LS-SNP   dbSNP   E 510 A - > V Coil 32% (Intermediate) 19 7167979
    rs2229429 LS-SNP   dbSNP   E 519 D - > E Coil 60% (Exposed) 19 7166388
    rs141626777 LS-SNP   dbSNP   E 552 L - > V Beta Ladder 9% (Buried) 19 7166291
    rs201034510 LS-SNP   dbSNP   E 636 A - > G Coil 67% (Exposed) 19 7163084
    rs76673783 LS-SNP   dbSNP   E 637 E - > G Coil 24% (Intermediate) 19 7163081
    rs145643501 LS-SNP   dbSNP   E 758 S - > L Coil 38% (Exposed) 19 7143015
    rs151246790 LS-SNP   dbSNP   E 761 V - > M Beta Ladder 27% (Intermediate) 19 7143007
    rs78433961 LS-SNP   dbSNP   E 769 R - > S Beta Ladder 62% (Exposed) 19 7142981
    rs35045353 LS-SNP   dbSNP   E 784 G - > S Beta Ladder 20% (Intermediate) 19 7142938
    rs2162771 LS-SNP   dbSNP   E 803 P - > L Beta Ladder 16% (Intermediate) 19 7142880
    rs139912396 LS-SNP   dbSNP   E 813 V - > I Coil 46% (Exposed) 19 7142851
    rs201667363 LS-SNP   dbSNP   E 828 G - > D Coil 0% (Buried) 19 7141806
    rs201466857 LS-SNP   dbSNP   E 831 T - > M Coil 39% (Exposed) 19 7141797
    rs182552223 LS-SNP   dbSNP   E 831 T - > A Coil 39% (Exposed) 19 7141798
    rs149536206 LS-SNP   dbSNP   E 832 H - > Y Coil 17% (Intermediate) 19 7141795
    rs139040947 LS-SNP   dbSNP   E 834 I - > T Coil 38% (Exposed) 19 7141788
    rs200110540 LS-SNP   dbSNP   E 839 V - > I Bend 8% (Buried) 19 7141774
    rs76077021 LS-SNP   dbSNP   E 862 R - > W Coil 34% (Intermediate) 19 7141705
    rs187282966 LS-SNP   dbSNP   E 862 R - > Q Coil 34% (Intermediate) 19 7141704
    rs183360558 LS-SNP   dbSNP   E 866 D - > N Coil 21% (Intermediate) 19 7141693
    rs145847962 LS-SNP   dbSNP   E 868 E - > Q Coil 29% (Intermediate) 19 7132328
    rs144029037 LS-SNP   dbSNP   E 873 V - > I Coil 37% (Exposed) 19 7132313