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Solution structure of the PDZ domain of human Rho guanine nucleotide exchange factor 11
Biology and Chemistry Report
2DLS
  •   Structure Details   Hide

    Structure Keywords

    Keywords SIGNALING PROTEIN
    Text PDZ domain, Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF, ARHGEF11, KIAA0380, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN

    Polymeric Molecules

    Chain A
    Description Rho guanine nucleotide exchange factor 11 
    Fragment PDZ domain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 9441.9 
    Source Method genetically manipulated  
    Entity Name PDZ-RhoGEF 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A ARHGB_HUMAN O15085     

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene arhgef11, kiaa0380
    Host Scientific Name Cell free synthesis  
    Host Vector Type Plasmid
    Host Plasmid Name P050919-12
    Description Cell Free Protein Synthesis


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q21 9826     Rho guanine nucleotide exchange factor (GEF) 11 ARHGEF11    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs143441387 LS-SNP   dbSNP   A 29 R - > C Bend 77% (Exposed) 1 156954161
    rs151017400 LS-SNP   dbSNP   A 31 V - > G Coil 1% (Buried) 1 156954154
    rs142752332 LS-SNP   dbSNP   A 37 R - > Q Coil 61% (Exposed) 1 156954136
    rs142608371 LS-SNP   dbSNP   A 37 R - > W Coil 61% (Exposed) 1 156954137
    rs111503701 LS-SNP   dbSNP   A 44 K - > E Turn 61% (Exposed) 1 156950264
    rs113635960 LS-SNP   dbSNP   A 58 G - > S Turn 77% (Exposed) 1 156949072
    rs201406921 LS-SNP   dbSNP   A 77 A - > T Bend 49% (Exposed) 1 156948169
    rs141941706 LS-SNP   dbSNP   A 91 M - > V Bend 68% (Exposed) 1 156948127