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Solution structure of the 13th filamin domain from human Filamin-B
Biology and Chemistry Report
2DJ4
  •   Structure Details   Hide

    Structure Keywords

    Keywords STRUCTURAL PROTEIN
    Text beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, National Project on Protein Structural and Functional Analyses, Structural Genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, STRUCTURAL PROTEIN

    Polymeric Molecules

    Chain A
    Description Filamin-B 
    Fragment Filamin domain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11197.7 
    Source Method genetically manipulated  
    Entity Name FLN-B, Beta-filamin, Actin-binding-like protein, Thyroid autoantigen, Truncated actin-binding protein, Truncated ABP, ABP-280 homolog, ABP-278, Filamin 3, Filamin homolog 1, Fh1 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A FLNB_HUMAN O75369     

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    1.14.13.80      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    30036   Actin Cytoskeleton Organization  A Process That Is Carried Out At the Cellular Level Which Results in the Assembly Arrangement of Constituent Parts or Disassembly of Cytoskeletal Structures Comprising Actin Filaments and Their Associated Proteins. 
    30154   Cell Differentiation  The Process in Which Relatively Unspecialized Cells E.g. Embryonic or Regenerative Cells Acquire Specialized Structural And/or Functional Features That Characterize the Cells Tissues or Organs of the Mature Organism or Some Other Relatively Stable Phase of the Organism's Life History. Differentiation Includes the Processes Involved in Commitment of a Cell to a Specific Fate and Its Subsequent Development to the Mature State. 
    3779   Actin Binding  Interacting Selectively and Non Covalently with Monomeric or Multimeric Forms of Actin Including Actin Filaments. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene flnb
    Host Scientific Name Cell free synthesis  
    Host Vector Type Plasmid
    Host Plasmid Name P060123-13
    Description Cell Free Protein Synthesis


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    3 3p14.3 2317     filamin B, beta FLNB    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs143831841 LS-SNP   dbSNP   A 1 F - > L Coil 152% (Exposed) 3 58116478
    rs80356511 LS-SNP   dbSNP   A 21 L - > R Turn 19% (Intermediate) 3 58116537
    rs113625188 LS-SNP   dbSNP   A 22 G - > S Bend 33% (Intermediate) 3 58116539
    rs200297468 LS-SNP   dbSNP   A 22 G - > A Bend 33% (Intermediate) 3 58116540
    rs142764838 LS-SNP   dbSNP   A 23 S - > L Bend 76% (Exposed) 3 58116543
    rs140018418 LS-SNP   dbSNP   A 26 R - > Q Beta 39% (Exposed) 3 58116552
    rs199590811 LS-SNP   dbSNP   A 28 R - > H Turn 95% (Exposed) 3 58116558
    rs200849899 LS-SNP   dbSNP   A 53 R - > Q Bend 75% (Exposed) 3 58116633
    rs12632456 LS-SNP   dbSNP   A 61 V - > M Coil 70% (Exposed) 3 58118555
    rs141098733 LS-SNP   dbSNP   A 62 V - > M Beta Ladder 65% (Exposed) 3 58118558
    rs150947880 LS-SNP   dbSNP   A 66 D - > H Bend 95% (Exposed) 3 58118570
    rs201292963 LS-SNP   dbSNP   A 70 T - > P Beta Ladder 30% (Intermediate) 3 58118582
    rs150445941 LS-SNP   dbSNP   A 89 D - > N Bend 83% (Exposed) 3 58118639
    rs111498181 LS-SNP   dbSNP   A 94 R - > HP Turn 61% (Exposed) 3 58118655
    rs184586811 LS-SNP   dbSNP   A 106 D - > G Coil 58% (Exposed) 3 58120375