POP-OUT | CLOSE

An Information Portal to 108395 Biological Macromolecular Structures

Solution structure of the 19th filamin domain from human Filamin-B
Biology and Chemistry Report
2DI8
  •   Structure Details   Hide

    Structure Keywords

    Keywords STRUCTURAL PROTEIN
    Text beta-sandwich, immunoglobulin-like fold, filamin domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, STRUCTURAL PROTEIN

    Polymeric Molecules

    Chain A
    Description Filamin-B 
    Fragment Filamin domain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11537.8 
    Source Method genetically manipulated  
    Entity Name FLN-B, Beta-filamin, Actin-binding-like protein, Thyroid autoantigen, Truncated actin-binding protein, Truncated ABP, ABP-280 homolog, ABP-278, Filamin 3, Filamin homolog 1, Fh1 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A FLNB_HUMAN O75369     

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    1.14.13.80      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    30036   Actin Cytoskeleton Organization  A Process That Is Carried Out At the Cellular Level Which Results in the Assembly Arrangement of Constituent Parts or Disassembly of Cytoskeletal Structures Comprising Actin Filaments and Their Associated Proteins. 
    30154   Cell Differentiation  The Process in Which Relatively Unspecialized Cells E.g. Embryonic or Regenerative Cells Acquire Specialized Structural And/or Functional Features That Characterize the Cells Tissues or Organs of the Mature Organism or Some Other Relatively Stable Phase of the Organism's Life History. Differentiation Includes the Processes Involved in Commitment of a Cell to a Specific Fate and Its Subsequent Development to the Mature State. 
    3779   Actin Binding  Interacting Selectively and Non Covalently with Monomeric or Multimeric Forms of Actin Including Actin Filaments. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene flnb
    Host Scientific Name Cell free synthesis  
    Host Vector Type Plasmid
    Host Plasmid Name P050919-18
    Description Cell Free Protein Synthesis


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    3 3p14.3 2317     filamin B, beta FLNB    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs146579435 LS-SNP   dbSNP   A 12 R - > C 3/10 Helix 97% (Exposed) 3 58134495
    rs62621996 LS-SNP   dbSNP   A 15 K - > R Beta Ladder 60% (Exposed) 3 58134505
    rs138034708 LS-SNP   dbSNP   A 19 R - > C Bend 79% (Exposed) 3 58134516
    rs188216614 LS-SNP   dbSNP   A 19 R - > H Bend 79% (Exposed) 3 58134517
    rs137885421 LS-SNP   dbSNP   A 25 R - > Q Beta Ladder 46% (Exposed) 3 58134535
    rs146214674 LS-SNP   dbSNP   A 27 F - > S Turn 69% (Exposed) 3 58134541
    rs199980748 LS-SNP   dbSNP   A 48 V - > M Beta Ladder 10% (Intermediate) 3 58135600
    rs139346854 LS-SNP   dbSNP   A 51 P - > S Bend 40% (Exposed) 3 58135609
    rs150070349 LS-SNP   dbSNP   A 54 V - > A Coil 3% (Buried) 3 58135619
    rs141698427 LS-SNP   dbSNP   A 67 K - > R Beta Ladder 29% (Intermediate) 3 58135658
    rs201831615 LS-SNP   dbSNP   A 80 V - > I Beta Ladder 0% (Buried) 3 58135696
    rs148043654 LS-SNP   dbSNP   A 83 K - > R Beta Ladder 33% (Intermediate) 3 58135706
    rs141559684 LS-SNP   dbSNP   A 85 A - > T Bend 13% (Intermediate) 3 58135711