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Solution structure of the Bromodomain of Peregrin
Biology and Chemistry Report
2D9E
  •   Structure Details   Hide

    Structure Keywords

    Keywords Transcription
    Text FOUR-HELIX BUNDLE, transcription activator, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Transcription

    Polymeric Molecules

    Chain A
    Description Peregrin 
    Fragment Bromodomain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13777.6 
    Source Method genetically manipulated  
    Entity Name Bromodomain and PHD finger-containing protein 1, BR140 protein 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A BRPF1_HUMAN B4DEZ6     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene brpf1
    Host Vector Type Plasmid
    Host Plasmid Name P050314-10
    Description Cell Free Protein Synthesis


    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs150442469 LS-SNP   dbSNP   A 61 R - > H Coil 82% (Exposed) 3 9784701
    rs199652982 LS-SNP   dbSNP   A 105 R - > C Helix 103% (Exposed) 3 9784832
    rs145244506 LS-SNP   dbSNP   A 114 M - > I Turn 46% (Exposed) 3 9784861