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An Information Portal to 105097 Biological Macromolecular Structures

RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH U8 RNA
Biology and Chemistry Report
2C37
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE
    Text EXOSOME, RRP41, RRP42, EXORIBONUCLEASE, RNA DEGRADATION, ARCHAEAL, HYDROLASE

    Polymeric Molecules

    Chain A,C,E,G,I,K,M,O,Q,S,U,W
    Description PROBABLE EXOSOME COMPLEX EXONUCLEASE 2 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 30227.9 
    Source Method genetically manipulated  
    Chain B,D,F,H,J,L,N,P,R,T,V,X
    Description PROBABLE EXOSOME COMPLEX EXONUCLEASE 1 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 27613.1 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CL  CHLORIDE ION  Cl   35.45  View 
    NA  SODIUM ION  Na   22.99  View 
    RP5  5-O-phosphono-beta-D-ribofuranose  C5 H11 O8 P   230.11  View 
    U5P  URIDINE-5'-MONOPHOSPHATE  C9 H13 N2 O9 P   324.18  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,C,E,G,I,K,M,O,Q,S,U,W RRP42_SULSO Q9UXC0     
    B,D,F,H,J,L,N,P,R,T,V,X RRP41_SULSO Q9UXC2     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A C E G I K M O Q S U W  3.1.13      
    B D F H J L N P R T V X  3.1.13      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,C,E,G,I,K,M,O,Q,S,U,W
    GO ID   Ontology GO Term Definition
    6401   RNA Catabolic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of RNA Ribonucleic Acid One of the Two Main Type of Nucleic Acid Consisting of a Long Unbranched Macromolecule Formed From Ribonucleotides Joined in 3' 5' Phosphodiester Linkage. 
    90305   Nucleic Acid Phosphodiester Bond Hydrolysis  The Nucleic Acid Metabolic Process in Which the Phosphodiester Bonds Between Nucleotides Are Cleaved by Hydrolysis. 
    178   Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    8408   3' 5' Exonuclease Activity  Catalysis of the Hydrolysis of Ester Linkages Within Nucleic Acids by Removing Nucleotide Residues From the 3' End. 
    Chain B,D,F,H,J,L,N,P,R,T,V,X
    GO ID   Ontology GO Term Definition
    6401   RNA Catabolic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of RNA Ribonucleic Acid One of the Two Main Type of Nucleic Acid Consisting of a Long Unbranched Macromolecule Formed From Ribonucleotides Joined in 3' 5' Phosphodiester Linkage. 
    90305   Nucleic Acid Phosphodiester Bond Hydrolysis  The Nucleic Acid Metabolic Process in Which the Phosphodiester Bonds Between Nucleotides Are Cleaved by Hydrolysis. 
    90503   RNA Phosphodiester Bond Hydrolysis Exonucleolytic  The Chemical Reactions and Pathways Involving the Hydrolysis of Terminal 3' 5' Phosphodiester Bonds in One or Two Strands of Ribonucleotides. 
    178   Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    175   3' 5' Exoribonuclease Activity  Catalysis of the Sequential Cleavage of Mononucleotides From a Free 3' Terminus of an RNA Molecule. 
    4518   Nuclease Activity  Catalysis of the Hydrolysis of Ester Linkages Within Nucleic Acids. 
    4527   Exonuclease Activity  Catalysis of the Hydrolysis of Ester Linkages Within Nucleic Acids by Removing Nucleotide Residues From the 3' or 5' End. 
    16787   Hydrolase Activity  Catalysis of the Hydrolysis of Various Bonds E.g. C O C N C C Phosphoric Anhydride Bonds Etc. Hydrolase Is the Systematic Name For Any Enzyme of EC Class 3. 
    16896   Exoribonuclease Activity Producing 5' Phosphomonoesters  Catalysis of the Hydrolysis of Ester Linkages Within Ribonucleic Acids by Removing Nucleotide Residues From the 3' or 5' End to Yield 5' Phosphomonoesters. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B,D,F,H,J,L,N,P,R,T,V,X
    Scientific Name Sulfolobus solfataricus  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Plasmid Name PET-15B


    Chain A,C,E,G,I,K,M,O,Q,S,U,W
    Scientific Name Sulfolobus solfataricus  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Plasmid Name PET-15B


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    - - 1454997     exosome complex RNA-binding protein Rrp42 SSO0732    
    - - 1454998     exosome complex exonuclease Rrp41 RPH