POP-OUT | CLOSE
 
CRYSTAL STRUCTURE OF THE HUMAN PIM1 IN COMPLEX WITH A RUTHENIUM ORGANOMETALLIC LIGAND RU2
Biology and Chemistry Report
2BZI
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text PIM1, KINASE, CANCER, LEUKEMIA, NUCLEAR PROTEIN, NUCLEOTIDE-BINDING, TRANSFERASE

    Polymeric Molecules

    Chain B
    Description PROTO-ONCOGENE SERINE THREONINE PROTEIN KINASE PIM1 
    Mutation YES 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 35712.9 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    DW2  RU-PYRIDOCARBAZOLE-2  C23 H13 N3 O4 Ru   496.44  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    B PIM1_HUMAN P11309     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    2.7.11.1        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain B
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4674   Protein Serine/threonine Kinase Activity  Catalysis of the Reactions: ATP + Protein Serine = Adp + Protein Serine Phosphate and ATP + Protein Threonine = Adp + Protein Threonine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21
    Host Vector Type Plasmid
    Host Plasmid Name P11-TORONTO


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    6 6p21.2 5292     Pim-1 proto-oncogene, serine/threonine kinase PIM1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs149210226 LS-SNP   dbSNP   B 82 N - > D Turn 81% (Exposed) 6 37138904
    rs35760989 LS-SNP   dbSNP   B 124 E - > Q Bend 64% (Exposed) 6 37139030
    rs200523275 LS-SNP   dbSNP   B 135 E - > K Helix 71% (Exposed) 6 37139063
    rs33989191 LS-SNP   dbSNP   B 142 E - > D Helix 36% (Intermediate) 6 37139086
    rs141143854 LS-SNP   dbSNP   B 157 H - > Y Helix 21% (Intermediate) 6 37139129
    rs200536541 LS-SNP   dbSNP   B 157 H - > P Helix 21% (Intermediate) 6 37139130
    rs200495767 LS-SNP   dbSNP   B 184 L - > V Beta Ladder 3% (Buried) 6 37139210
    rs137884665 LS-SNP   dbSNP   B 197 V - > F Coil 23% (Intermediate) 6 37139249
    rs199791472 LS-SNP   dbSNP   B 206 V - > E 3/10 Helix 27% (Intermediate) 6 37140781
    rs141695323 LS-SNP   dbSNP   B 282 E - > V Helix 70% (Exposed) 6 37141770
    rs9349029 LS-SNP   dbSNP   B 300 A - > V Helix 0% (Buried) 6 37141824
    rs199624946 LS-SNP   dbSNP   B 302 I - > T Helix 59% (Exposed) 6 37141830