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Complete RNA Polymerase II-RNA inhibitor complex
Biology and Chemistry Report
2B63
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANsferase/RNA
    Text RNA Polymerase II, RNA, aptamer, protein-RNA complex, inhibitor, TRANsferase-RNA COMPLEX

    Polymeric Molecules

    Chain R
    Description 31-MER 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polyribonucleotide 
    Formula Weight 10323.6 
    Source Method synthetic  
    Chain I
    Description DNA-directed RNA polymerase II subunit 9 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14308.2 
    Source Method natural source  
    Entity Name DNA-directed RNA polymerase II 14.2 kDa polypeptide, B12.6 
    Chain J
    Description DNA-directed RNA polymerases I/II/III subunit 10 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 8290.8 
    Source Method natural source  
    Entity Name DNA- directed RNA polymerases I, II, and III 8.3 kDa polypeptide, ABC10- beta, ABC8 
    Chain K
    Description DNA-directed RNA polymerase II 13.6 kDa polypeptide 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13633.6 
    Source Method natural source  
    Entity Name B13.6 
    Chain L
    Description DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 7730.0 
    Source Method natural source  
    Entity Name ABC10-alpha 
    Chain A
    Description DNA-directed RNA polymerase II largest subunit 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 191822.0 
    Source Method natural source  
    Entity Name RNA polymerase II subunit 1, B220 
    Chain B
    Description DNA-directed RNA polymerase II 140 kDa polypeptide 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 138938.0 
    Source Method natural source  
    Entity Name B150, RNA polymerase II subunit 2 
    Chain C
    Description DNA-directed RNA polymerase II 45 kDa polypeptide 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 35330.7 
    Source Method natural source  
    Entity Name B44.5 
    Chain D
    Description DNA-directed RNA polymerase II 32 kDa polypeptide 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 25451.4 
    Source Method genetically manipulated  
    Entity Name B32 
    Chain E
    Description DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 25117.3 
    Source Method natural source  
    Entity Name ABC27 
    Chain F
    Description DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17932.0 
    Source Method natural source  
    Entity Name ABC23 
    Chain G
    Description DNA-directed RNA polymerase II 19 kDa polypeptide 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 19081.2 
    Source Method genetically manipulated  
    Entity Name B16 
    Chain H
    Description DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 16525.5 
    Source Method natural source  
    Entity Name ABC14.4 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    MG  MAGNESIUM ION  Mg   24.31  View 
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A RPB1_YEAST D6VRK8     
    B RPB2_YEAST D6W2K8     
    C RPB3_YEAST D6VVQ8     
    D RPB4_YEAST D6VW44     
    E RPAB1_YEAST D6VQE9     
    F RPAB2_YEAST D6W4I7     
    G RPB7_YEAST D6VT36     
    H RPAB3_YEAST D6W2S9     
    I RPB9_YEAST D6VU72     
    J RPAB5_YEAST D6W2R6     
    K RPB11_YEAST D6W262     
    L RPAB4_YEAST D3DL93     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.7.6      
    2.7.7.6      
    2.7.7.6      
    2.7.7.6      
    2.7.7.6      
    2.7.7.6      
    2.7.7.6      
    2.7.7.6      
    2.7.7.6      
    2.7.7.6      
    2.7.7.6      
    2.7.7.6      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    1172   Transcription RNA Templated  The Cellular Synthesis of RNA On a Template of Rna. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6366   Transcription From RNA Polymerase Ii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Ii Originating At an RNA Polymerase Ii Promoter. Includes Transcription of Messenger RNA (mrna) and Certain Small Nuclear Rnas (snrnas). 
    19985   Translesion Synthesis  The Replication of Damaged DNA by Synthesis Across a Lesion in the Template Strand; a Specialized DNA Polymerase or Replication Complex Inserts a Defined Nucleotide Across From the Lesion Which Allows DNA Synthesis to Continue Beyond the Lesion. This Process Can Be Mutagenic Depending On the Damaged Nucleotide and the Inserted Nucleotide. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5665   DNA Directed RNA Polymerase Ii Core Complex  RNA Polymerase Ii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Mrnas Snornas and Some of the Snrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Largest Subunit of RNA Polymerase Ii Contains an Essential Carboxyl Terminal Domain (ctd) Composed of a Variable Number of Heptapeptide Repeats (ysptsps). the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerases I and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    1055   RNA Polymerase Ii Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase Ii Specific Promoter to Direct Initiation and Catalyses DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3899   DNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template I.e. the Catalysis of DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3968   RNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1); Uses an RNA Template. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    16740   Transferase Activity  Catalysis of the Transfer of a Group E.g. a Methyl Group Glycosyl Group Acyl Group Phosphorus Containing or Other Groups From One Compound (generally Regarded As the Donor) to Another Compound (generally Regarded As the Acceptor). Transferase Is the Systematic Name For Any Enzyme of EC Class 2. 
    16779   Nucleotidyltransferase Activity  Catalysis of the Transfer of a Nucleotidyl Group to a Reactant. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 
    Chain B
    GO ID   Ontology GO Term Definition
    1172   Transcription RNA Templated  The Cellular Synthesis of RNA On a Template of Rna. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6366   Transcription From RNA Polymerase Ii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Ii Originating At an RNA Polymerase Ii Promoter. Includes Transcription of Messenger RNA (mrna) and Certain Small Nuclear Rnas (snrnas). 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5665   DNA Directed RNA Polymerase Ii Core Complex  RNA Polymerase Ii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Mrnas Snornas and Some of the Snrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Largest Subunit of RNA Polymerase Ii Contains an Essential Carboxyl Terminal Domain (ctd) Composed of a Variable Number of Heptapeptide Repeats (ysptsps). the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerases I and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    1055   RNA Polymerase Ii Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase Ii Specific Promoter to Direct Initiation and Catalyses DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3899   DNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template I.e. the Catalysis of DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3968   RNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1); Uses an RNA Template. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    16740   Transferase Activity  Catalysis of the Transfer of a Group E.g. a Methyl Group Glycosyl Group Acyl Group Phosphorus Containing or Other Groups From One Compound (generally Regarded As the Donor) to Another Compound (generally Regarded As the Acceptor). Transferase Is the Systematic Name For Any Enzyme of EC Class 2. 
    16779   Nucleotidyltransferase Activity  Catalysis of the Transfer of a Nucleotidyl Group to a Reactant. 
    32549   Ribonucleoside Binding  Interacting Selectively and Non Covalently with a Ribonucleoside a Compound Consisting of a Purine or Pyrimidine Nitrogenous Base Linked to Ribose. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 
    Chain C
    GO ID   Ontology GO Term Definition
    1172   Transcription RNA Templated  The Cellular Synthesis of RNA On a Template of Rna. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6366   Transcription From RNA Polymerase Ii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Ii Originating At an RNA Polymerase Ii Promoter. Includes Transcription of Messenger RNA (mrna) and Certain Small Nuclear Rnas (snrnas). 
    6369   Termination of RNA Polymerase Ii Transcription  The Process in Which the Synthesis of an RNA Molecule by RNA Polymerase Ii Using a DNA Template Is Completed. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5654   Nucleoplasm  That Part of the Nuclear Content Other Than the Chromosomes or the Nucleolus. 
    5665   DNA Directed RNA Polymerase Ii Core Complex  RNA Polymerase Ii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Mrnas Snornas and Some of the Snrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Largest Subunit of RNA Polymerase Ii Contains an Essential Carboxyl Terminal Domain (ctd) Composed of a Variable Number of Heptapeptide Repeats (ysptsps). the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerases I and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    1055   RNA Polymerase Ii Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase Ii Specific Promoter to Direct Initiation and Catalyses DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3899   DNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template I.e. the Catalysis of DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3968   RNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1); Uses an RNA Template. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 
    46983   Protein Dimerization Activity  The Formation of a Protein Dimer a Macromolecular Structure Consists of Two Noncovalently Associated Identical or Nonidentical Subunits. 
    Chain D
    GO ID   Ontology GO Term Definition
    288   Nuclear Transcribed MRNA Catabolic Process Deadenylation Dependent Decay  A Major Pathway of Degradation of Nuclear Transcribed Mrnas That Proceeds Through a Series of Ordered Steps That Includes Poly(a) Tail Shortening and That Can Regulate MRNA Stability. 
    1172   Transcription RNA Templated  The Cellular Synthesis of RNA On a Template of Rna. 
    6281   DNA Repair  The Process of Restoring DNA After Damage. Genomes Are Subject to Damage by Chemical and Physical Agents in the Environment (e.g. Uv and Ionizing Radiations Chemical Mutagens Fungal and Bacterial Toxins Etc.) and by Free Radicals or Alkylating Agents Endogenously Generated in Metabolism. DNA Is Also Damaged Because of Errors During Its Replication. a Variety of Different DNA Repair Pathways Have Been Reported That Include Direct Reversal Base Excision Repair Nucleotide Excision Repair Photoreactivation Bypass Double Strand Break Repair Pathway and Mismatch Repair Pathway. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6366   Transcription From RNA Polymerase Ii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Ii Originating At an RNA Polymerase Ii Promoter. Includes Transcription of Messenger RNA (mrna) and Certain Small Nuclear Rnas (snrnas). 
    6367   Transcription Initiation From RNA Polymerase Ii Promoter  Any Process Involved in the Assembly of the RNA Polymerase Ii Preinitiation Complex (pic) At an RNA Polymerase Ii Promoter Region of a DNA Template Resulting in the Subsequent Synthesis of RNA From That Promoter. the Initiation Phase Includes Pic Assembly and the Formation of the First Few Bonds in the RNA Chain Including Abortive Initiation Which Occurs When the First Few Nucleotides Are Repeatedly Synthesized and Then Released. Promoter Clearance or Release Is the Transition Between the Initiation and Elongation Phases of Transcription. 
    6397   MRNA Processing  Any Process Involved in the Conversion of a Primary MRNA Transcript Into One or More Mature Mrna(s) Prior to Translation Into Polypeptide. 
    6974   Cellular Response to DNA Damage Stimulus  Any Process That Results in a Change in State or Activity of a Cell (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of a Stimulus Indicating Damage to Its DNA From Environmental Insults or Errors During Metabolism. 
    31990   MRNA Export From Nucleus in Response to Heat Stress  The Directed Movement of MRNA From the Nucleus to the Cytoplasm During a Heat Stimulus a Temperature Stimulus Above the Optimal Temperature For the Organism; in Particular a Process That Enables an Organism Withstand Exposure to Temperatures That Would Otherwise Lethally Impair Poly(a)+ MRNA Nucleus Export. 
    34402   Recruitment of 3' End Processing Factors to RNA Polymerase Ii Holoenzyme Complex  The Process in Which Proteins Required For 3' End Transcript Processing Become Associated with the RNA Polymerase Ii Holoenzyme Complex and the 3' End of a Transcript. 
    44237   Cellular Metabolic Process  The Chemical Reactions and Pathways by Which Individual Cells Transform Chemical Substances. 
    45948   Positive Regulation of Translational Initiation  Any Process That Activates or Increases the Frequency Rate or Extent of Translational Initiation. 
    932   Cytoplasmic MRNA Processing Body  A Focus in the Cytoplasm Where Mrnas May Become Inactivated by Decapping or Some Other Mechanism. MRNA Processing and Binding Proteins Are Localized to These Foci. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5665   DNA Directed RNA Polymerase Ii Core Complex  RNA Polymerase Ii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Mrnas Snornas and Some of the Snrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Largest Subunit of RNA Polymerase Ii Contains an Essential Carboxyl Terminal Domain (ctd) Composed of a Variable Number of Heptapeptide Repeats (ysptsps). the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerases I and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    3697   Single Stranded DNA Binding  Interacting Selectively and Non Covalently with Single Stranded Dna. 
    3727   Single Stranded RNA Binding  Interacting Selectively and Non Covalently with Single Stranded Rna. 
    3824   Catalytic Activity  Catalysis of a Biochemical Reaction At Physiological Temperatures. in Biologically Catalyzed Reactions the Reactants Are Known As Substrates and the Catalysts Are Naturally Occurring Macromolecular Substances Known As Enzymes. Enzymes Possess Specific Binding Sites For Substrates and Are Usually Composed Wholly or Largely of Protein But RNA That Has Catalytic Activity (ribozyme) Is Often Also Regarded As Enzymatic. 
    3899   DNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template I.e. the Catalysis of DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3968   RNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1); Uses an RNA Template. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    31369   Translation Initiation Factor Binding  Interacting Selectively and Non Covalently with a Translation Initiation Factor Any Polypeptide Factor Involved in the Initiation of Ribosome Mediated Translation. 
    Chain E
    GO ID   Ontology GO Term Definition
    1172   Transcription RNA Templated  The Cellular Synthesis of RNA On a Template of Rna. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6360   Transcription From RNA Polymerase I Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase I (rnap I) Originating At an Rnap I Promoter. 
    6366   Transcription From RNA Polymerase Ii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Ii Originating At an RNA Polymerase Ii Promoter. Includes Transcription of Messenger RNA (mrna) and Certain Small Nuclear Rnas (snrnas). 
    6383   Transcription From RNA Polymerase Iii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Iii Originating At an Rnap Iii Promoter. 
    42254   Ribosome Biogenesis  A Cellular Process That Results in the Biosynthesis of Constituent Macromolecules Assembly and Arrangement of Constituent Parts of Ribosome Subunits; Includes Transport to the Sites of Protein Synthesis. 
    42797   TRNA Transcription From RNA Polymerase Iii Promoter  The Synthesis of Transfer RNA (trna) From a DNA Template by RNA Polymerase Iii (pol Iii) Originating At a Pol Iii Promoter. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5654   Nucleoplasm  That Part of the Nuclear Content Other Than the Chromosomes or the Nucleolus. 
    5665   DNA Directed RNA Polymerase Ii Core Complex  RNA Polymerase Ii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Mrnas Snornas and Some of the Snrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Largest Subunit of RNA Polymerase Ii Contains an Essential Carboxyl Terminal Domain (ctd) Composed of a Variable Number of Heptapeptide Repeats (ysptsps). the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerases I and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    5666   DNA Directed RNA Polymerase Iii Complex  RNA Polymerase Iii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces 5s RRNA Trnas and Some of the Small Nuclear Rnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerase I and Others of Which Are Also Found in RNA Polymerases I and Ii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    5736   DNA Directed RNA Polymerase I Complex  RNA Polymerase I One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Rrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerase Iii and Others of Which Are Also Found in RNA Polymerases Ii and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    1054   RNA Polymerase I Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase I Specific Promoter to Direct Initiation and Catalyzes DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    1055   RNA Polymerase Ii Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase Ii Specific Promoter to Direct Initiation and Catalyses DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    1056   RNA Polymerase Iii Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase Iii Specific Promoter to Direct Initiation and Catalyses DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3899   DNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template I.e. the Catalysis of DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3968   RNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1); Uses an RNA Template. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    Chain F
    GO ID   Ontology GO Term Definition
    1172   Transcription RNA Templated  The Cellular Synthesis of RNA On a Template of Rna. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6360   Transcription From RNA Polymerase I Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase I (rnap I) Originating At an Rnap I Promoter. 
    6366   Transcription From RNA Polymerase Ii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Ii Originating At an RNA Polymerase Ii Promoter. Includes Transcription of Messenger RNA (mrna) and Certain Small Nuclear Rnas (snrnas). 
    6383   Transcription From RNA Polymerase Iii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Iii Originating At an Rnap Iii Promoter. 
    42254   Ribosome Biogenesis  A Cellular Process That Results in the Biosynthesis of Constituent Macromolecules Assembly and Arrangement of Constituent Parts of Ribosome Subunits; Includes Transport to the Sites of Protein Synthesis. 
    42797   TRNA Transcription From RNA Polymerase Iii Promoter  The Synthesis of Transfer RNA (trna) From a DNA Template by RNA Polymerase Iii (pol Iii) Originating At a Pol Iii Promoter. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5654   Nucleoplasm  That Part of the Nuclear Content Other Than the Chromosomes or the Nucleolus. 
    5665   DNA Directed RNA Polymerase Ii Core Complex  RNA Polymerase Ii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Mrnas Snornas and Some of the Snrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Largest Subunit of RNA Polymerase Ii Contains an Essential Carboxyl Terminal Domain (ctd) Composed of a Variable Number of Heptapeptide Repeats (ysptsps). the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerases I and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    5666   DNA Directed RNA Polymerase Iii Complex  RNA Polymerase Iii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces 5s RRNA Trnas and Some of the Small Nuclear Rnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerase I and Others of Which Are Also Found in RNA Polymerases I and Ii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    5736   DNA Directed RNA Polymerase I Complex  RNA Polymerase I One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Rrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerase Iii and Others of Which Are Also Found in RNA Polymerases Ii and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    1054   RNA Polymerase I Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase I Specific Promoter to Direct Initiation and Catalyzes DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    1055   RNA Polymerase Ii Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase Ii Specific Promoter to Direct Initiation and Catalyses DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    1056   RNA Polymerase Iii Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase Iii Specific Promoter to Direct Initiation and Catalyses DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3899   DNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template I.e. the Catalysis of DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3968   RNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1); Uses an RNA Template. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    Chain G
    GO ID   Ontology GO Term Definition
    291   Nuclear Transcribed MRNA Catabolic Process Exonucleolytic  The Chemical Reactions and Pathways Resulting in the Breakdown of the Transcript Body of a Nuclear Transcribed MRNA That Occurs When the Ends Are Not Protected by the 5' Cap or the 3' Poly(a) Tail. 
    1172   Transcription RNA Templated  The Cellular Synthesis of RNA On a Template of Rna. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6366   Transcription From RNA Polymerase Ii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Ii Originating At an RNA Polymerase Ii Promoter. Includes Transcription of Messenger RNA (mrna) and Certain Small Nuclear Rnas (snrnas). 
    6367   Transcription Initiation From RNA Polymerase Ii Promoter  Any Process Involved in the Assembly of the RNA Polymerase Ii Preinitiation Complex (pic) At an RNA Polymerase Ii Promoter Region of a DNA Template Resulting in the Subsequent Synthesis of RNA From That Promoter. the Initiation Phase Includes Pic Assembly and the Formation of the First Few Bonds in the RNA Chain Including Abortive Initiation Which Occurs When the First Few Nucleotides Are Repeatedly Synthesized and Then Released. Promoter Clearance or Release Is the Transition Between the Initiation and Elongation Phases of Transcription. 
    45948   Positive Regulation of Translational Initiation  Any Process That Activates or Increases the Frequency Rate or Extent of Translational Initiation. 
    60213   Positive Regulation of Nuclear Transcribed MRNA Poly(a) Tail Shortening  Any Process That Increases the Frequency Rate or Extent of Poly(a) Tail Shortening of a Nuclear Transcribed Mrna. Poly(a) Tail Shortening Is the Decrease in Length of the Poly(a) Tail of an MRNA From Full Length to an Oligo(a) Length. 
    932   Cytoplasmic MRNA Processing Body  A Focus in the Cytoplasm Where Mrnas May Become Inactivated by Decapping or Some Other Mechanism. MRNA Processing and Binding Proteins Are Localized to These Foci. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5665   DNA Directed RNA Polymerase Ii Core Complex  RNA Polymerase Ii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Mrnas Snornas and Some of the Snrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Largest Subunit of RNA Polymerase Ii Contains an Essential Carboxyl Terminal Domain (ctd) Composed of a Variable Number of Heptapeptide Repeats (ysptsps). the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerases I and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    3697   Single Stranded DNA Binding  Interacting Selectively and Non Covalently with Single Stranded Dna. 
    3723   RNA Binding  Interacting Selectively and Non Covalently with an RNA Molecule or a Portion Thereof. 
    3727   Single Stranded RNA Binding  Interacting Selectively and Non Covalently with Single Stranded Rna. 
    3899   DNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template I.e. the Catalysis of DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3968   RNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1); Uses an RNA Template. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    31369   Translation Initiation Factor Binding  Interacting Selectively and Non Covalently with a Translation Initiation Factor Any Polypeptide Factor Involved in the Initiation of Ribosome Mediated Translation. 
    Chain H
    GO ID   Ontology GO Term Definition
    1172   Transcription RNA Templated  The Cellular Synthesis of RNA On a Template of Rna. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6360   Transcription From RNA Polymerase I Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase I (rnap I) Originating At an Rnap I Promoter. 
    6366   Transcription From RNA Polymerase Ii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Ii Originating At an RNA Polymerase Ii Promoter. Includes Transcription of Messenger RNA (mrna) and Certain Small Nuclear Rnas (snrnas). 
    6383   Transcription From RNA Polymerase Iii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Iii Originating At an Rnap Iii Promoter. 
    42254   Ribosome Biogenesis  A Cellular Process That Results in the Biosynthesis of Constituent Macromolecules Assembly and Arrangement of Constituent Parts of Ribosome Subunits; Includes Transport to the Sites of Protein Synthesis. 
    42797   TRNA Transcription From RNA Polymerase Iii Promoter  The Synthesis of Transfer RNA (trna) From a DNA Template by RNA Polymerase Iii (pol Iii) Originating At a Pol Iii Promoter. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5654   Nucleoplasm  That Part of the Nuclear Content Other Than the Chromosomes or the Nucleolus. 
    5665   DNA Directed RNA Polymerase Ii Core Complex  RNA Polymerase Ii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Mrnas Snornas and Some of the Snrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Largest Subunit of RNA Polymerase Ii Contains an Essential Carboxyl Terminal Domain (ctd) Composed of a Variable Number of Heptapeptide Repeats (ysptsps). the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerases I and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    5666   DNA Directed RNA Polymerase Iii Complex  RNA Polymerase Iii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces 5s RRNA Trnas and Some of the Small Nuclear Rnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerase I and Others of Which Are Also Found in RNA Polymerases I and Ii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    5736   DNA Directed RNA Polymerase I Complex  RNA Polymerase I One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Rrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerase Iii and Others of Which Are Also Found in RNA Polymerases Ii and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    1054   RNA Polymerase I Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase I Specific Promoter to Direct Initiation and Catalyzes DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    1055   RNA Polymerase Ii Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase Ii Specific Promoter to Direct Initiation and Catalyses DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    1056   RNA Polymerase Iii Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase Iii Specific Promoter to Direct Initiation and Catalyses DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3899   DNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template I.e. the Catalysis of DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3968   RNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1); Uses an RNA Template. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    Chain I
    GO ID   Ontology GO Term Definition
    1172   Transcription RNA Templated  The Cellular Synthesis of RNA On a Template of Rna. 
    1193   Maintenance of Transcriptional Fidelity During DNA Templated Transcription Elongation From RNA Polymerase Ii Promoter  Suppression of the Occurrence of Transcriptional Errors Such As Substitutions And/or Insertions of Nucleotides That Do Not Correctly Match the Template Base During the Process of Transcription Elongation From an RNA Polymerase Ii Promoter. 
    6281   DNA Repair  The Process of Restoring DNA After Damage. Genomes Are Subject to Damage by Chemical and Physical Agents in the Environment (e.g. Uv and Ionizing Radiations Chemical Mutagens Fungal and Bacterial Toxins Etc.) and by Free Radicals or Alkylating Agents Endogenously Generated in Metabolism. DNA Is Also Damaged Because of Errors During Its Replication. a Variety of Different DNA Repair Pathways Have Been Reported That Include Direct Reversal Base Excision Repair Nucleotide Excision Repair Photoreactivation Bypass Double Strand Break Repair Pathway and Mismatch Repair Pathway. 
    6283   Transcription Coupled Nucleotide Excision Repair  The Nucleotide Excision Repair Process That Carries Out Preferential Repair of DNA Lesions On the Actively Transcribed Strand of the DNA Duplex. in Addition the Transcription Coupled Nucleotide Excision Repair Pathway Is Required For the Recognition and Repair of a Small Subset of Lesions That Are Not Recognized by the Global Genome Nucleotide Excision Repair Pathway. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6366   Transcription From RNA Polymerase Ii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Ii Originating At an RNA Polymerase Ii Promoter. Includes Transcription of Messenger RNA (mrna) and Certain Small Nuclear Rnas (snrnas). 
    6367   Transcription Initiation From RNA Polymerase Ii Promoter  Any Process Involved in the Assembly of the RNA Polymerase Ii Preinitiation Complex (pic) At an RNA Polymerase Ii Promoter Region of a DNA Template Resulting in the Subsequent Synthesis of RNA From That Promoter. the Initiation Phase Includes Pic Assembly and the Formation of the First Few Bonds in the RNA Chain Including Abortive Initiation Which Occurs When the First Few Nucleotides Are Repeatedly Synthesized and Then Released. Promoter Clearance or Release Is the Transition Between the Initiation and Elongation Phases of Transcription. 
    6974   Cellular Response to DNA Damage Stimulus  Any Process That Results in a Change in State or Activity of a Cell (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of a Stimulus Indicating Damage to Its DNA From Environmental Insults or Errors During Metabolism. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5665   DNA Directed RNA Polymerase Ii Core Complex  RNA Polymerase Ii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Mrnas Snornas and Some of the Snrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Largest Subunit of RNA Polymerase Ii Contains an Essential Carboxyl Terminal Domain (ctd) Composed of a Variable Number of Heptapeptide Repeats (ysptsps). the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerases I and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    3676   Nucleic Acid Binding  Interacting Selectively and Non Covalently with Any Nucleic Acid. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3899   DNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template I.e. the Catalysis of DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3968   RNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1); Uses an RNA Template. 
    8270   Zinc Ion Binding  Interacting Selectively and Non Covalently with Zinc (zn) Ions. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 
    Chain J
    GO ID   Ontology GO Term Definition
    1172   Transcription RNA Templated  The Cellular Synthesis of RNA On a Template of Rna. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6360   Transcription From RNA Polymerase I Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase I (rnap I) Originating At an Rnap I Promoter. 
    6366   Transcription From RNA Polymerase Ii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Ii Originating At an RNA Polymerase Ii Promoter. Includes Transcription of Messenger RNA (mrna) and Certain Small Nuclear Rnas (snrnas). 
    6383   Transcription From RNA Polymerase Iii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Iii Originating At an Rnap Iii Promoter. 
    42254   Ribosome Biogenesis  A Cellular Process That Results in the Biosynthesis of Constituent Macromolecules Assembly and Arrangement of Constituent Parts of Ribosome Subunits; Includes Transport to the Sites of Protein Synthesis. 
    42797   TRNA Transcription From RNA Polymerase Iii Promoter  The Synthesis of Transfer RNA (trna) From a DNA Template by RNA Polymerase Iii (pol Iii) Originating At a Pol Iii Promoter. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5654   Nucleoplasm  That Part of the Nuclear Content Other Than the Chromosomes or the Nucleolus. 
    5665   DNA Directed RNA Polymerase Ii Core Complex  RNA Polymerase Ii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Mrnas Snornas and Some of the Snrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Largest Subunit of RNA Polymerase Ii Contains an Essential Carboxyl Terminal Domain (ctd) Composed of a Variable Number of Heptapeptide Repeats (ysptsps). the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerases I and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    5666   DNA Directed RNA Polymerase Iii Complex  RNA Polymerase Iii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces 5s RRNA Trnas and Some of the Small Nuclear Rnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerase I and Others of Which Are Also Found in RNA Polymerases I and Ii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    5730   Nucleolus  A Small Dense Body One or More of Which Are Present in the Nucleus of Eukaryotic Cells. It Is Rich in RNA and Protein Is Not Bounded by a Limiting Membrane and Is Not Seen During Mitosis. Its Prime Function Is the Transcription of the Nucleolar DNA Into 45s Ribosomal Precursor RNA the Processing of This RNA Into 5.8s 18s and 28s Components of Ribosomal RNA and the Association of These Components with 5s RNA and Proteins Synthesized Outside the Nucleolus. This Association Results in the Formation of Ribonucleoprotein Precursors; These Pass Into the Cytoplasm and Mature Into the 40s and 60s Subunits of the Ribosome. 
    5736   DNA Directed RNA Polymerase I Complex  RNA Polymerase I One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Rrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerase Iii and Others of Which Are Also Found in RNA Polymerases Ii and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    1054   RNA Polymerase I Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase I Specific Promoter to Direct Initiation and Catalyzes DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    1055   RNA Polymerase Ii Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase Ii Specific Promoter to Direct Initiation and Catalyses DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    1056   RNA Polymerase Iii Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase Iii Specific Promoter to Direct Initiation and Catalyses DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3899   DNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template I.e. the Catalysis of DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3968   RNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1); Uses an RNA Template. 
    8270   Zinc Ion Binding  Interacting Selectively and Non Covalently with Zinc (zn) Ions. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 
    Chain K
    GO ID   Ontology GO Term Definition
    1172   Transcription RNA Templated  The Cellular Synthesis of RNA On a Template of Rna. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6366   Transcription From RNA Polymerase Ii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Ii Originating At an RNA Polymerase Ii Promoter. Includes Transcription of Messenger RNA (mrna) and Certain Small Nuclear Rnas (snrnas). 
    6369   Termination of RNA Polymerase Ii Transcription  The Process in Which the Synthesis of an RNA Molecule by RNA Polymerase Ii Using a DNA Template Is Completed. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5665   DNA Directed RNA Polymerase Ii Core Complex  RNA Polymerase Ii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Mrnas Snornas and Some of the Snrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Largest Subunit of RNA Polymerase Ii Contains an Essential Carboxyl Terminal Domain (ctd) Composed of a Variable Number of Heptapeptide Repeats (ysptsps). the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerases I and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    1055   RNA Polymerase Ii Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase Ii Specific Promoter to Direct Initiation and Catalyses DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3899   DNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template I.e. the Catalysis of DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3968   RNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1); Uses an RNA Template. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    46983   Protein Dimerization Activity  The Formation of a Protein Dimer a Macromolecular Structure Consists of Two Noncovalently Associated Identical or Nonidentical Subunits. 
    Chain L
    GO ID   Ontology GO Term Definition
    1172   Transcription RNA Templated  The Cellular Synthesis of RNA On a Template of Rna. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6360   Transcription From RNA Polymerase I Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase I (rnap I) Originating At an Rnap I Promoter. 
    6366   Transcription From RNA Polymerase Ii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Ii Originating At an RNA Polymerase Ii Promoter. Includes Transcription of Messenger RNA (mrna) and Certain Small Nuclear Rnas (snrnas). 
    6383   Transcription From RNA Polymerase Iii Promoter  The Synthesis of RNA From a DNA Template by RNA Polymerase Iii Originating At an Rnap Iii Promoter. 
    42254   Ribosome Biogenesis  A Cellular Process That Results in the Biosynthesis of Constituent Macromolecules Assembly and Arrangement of Constituent Parts of Ribosome Subunits; Includes Transport to the Sites of Protein Synthesis. 
    42797   TRNA Transcription From RNA Polymerase Iii Promoter  The Synthesis of Transfer RNA (trna) From a DNA Template by RNA Polymerase Iii (pol Iii) Originating At a Pol Iii Promoter. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5654   Nucleoplasm  That Part of the Nuclear Content Other Than the Chromosomes or the Nucleolus. 
    5665   DNA Directed RNA Polymerase Ii Core Complex  RNA Polymerase Ii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Mrnas Snornas and Some of the Snrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Largest Subunit of RNA Polymerase Ii Contains an Essential Carboxyl Terminal Domain (ctd) Composed of a Variable Number of Heptapeptide Repeats (ysptsps). the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerases I and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    5666   DNA Directed RNA Polymerase Iii Complex  RNA Polymerase Iii One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces 5s RRNA Trnas and Some of the Small Nuclear Rnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerase I and Others of Which Are Also Found in RNA Polymerases I and Ii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    5730   Nucleolus  A Small Dense Body One or More of Which Are Present in the Nucleus of Eukaryotic Cells. It Is Rich in RNA and Protein Is Not Bounded by a Limiting Membrane and Is Not Seen During Mitosis. Its Prime Function Is the Transcription of the Nucleolar DNA Into 45s Ribosomal Precursor RNA the Processing of This RNA Into 5.8s 18s and 28s Components of Ribosomal RNA and the Association of These Components with 5s RNA and Proteins Synthesized Outside the Nucleolus. This Association Results in the Formation of Ribonucleoprotein Precursors; These Pass Into the Cytoplasm and Mature Into the 40s and 60s Subunits of the Ribosome. 
    5736   DNA Directed RNA Polymerase I Complex  RNA Polymerase I One of Three Nuclear DNA Directed RNA Polymerases Found in All Eukaryotes Is a Multisubunit Complex; Typically It Produces Rrnas. Two Large Subunits Comprise the Most Conserved Portion Including the Catalytic Site and Share Similarity with Other Eukaryotic and Bacterial Multisubunit RNA Polymerases. the Remainder of the Complex Is Composed of Smaller Subunits (generally Ten or More) Some of Which Are Also Found in RNA Polymerase Iii and Others of Which Are Also Found in RNA Polymerases Ii and Iii. Although the Core Is Competent to Mediate Ribonucleic Acid Synthesis It Requires Additional Factors to Select the Appropriate Template. 
    1054   RNA Polymerase I Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase I Specific Promoter to Direct Initiation and Catalyzes DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    1055   RNA Polymerase Ii Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase Ii Specific Promoter to Direct Initiation and Catalyses DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    1056   RNA Polymerase Iii Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template That Contains an RNA Polymerase Iii Specific Promoter to Direct Initiation and Catalyses DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3899   DNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1). Utilizes a DNA Template I.e. the Catalysis of DNA Template Directed Extension of the 3' End of an RNA Strand by One Nucleotide At a Time. Can Initiate a Chain 'de Novo'. 
    3968   RNA Directed RNA Polymerase Activity  Catalysis of the Reaction: Nucleoside Triphosphate + Rna(n) = Diphosphate + Rna(n+1); Uses an RNA Template. 
    8270   Zinc Ion Binding  Interacting Selectively and Non Covalently with Zinc (zn) Ions. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 


     
  •   Gene Details   Hide

    Natural Source

    Chain L
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Genus Saccharomyces
    Chain K
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Genus Saccharomyces
    Chain J
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Genus Saccharomyces
    Chain I
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Genus Saccharomyces
    Chain H
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Genus Saccharomyces
    Chain F
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Genus Saccharomyces
    Chain E
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Genus Saccharomyces
    Chain C
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Genus Saccharomyces
    Chain B
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Genus Saccharomyces
    Chain A
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Genus Saccharomyces

    Genetic Source

    Chain G
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Genus Saccharomyces
    Gene rpb7
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia


    Chain D
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Genus Saccharomyces
    Gene rpb4
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    II - 852451     DNA-directed RNA polymerase core subunit RPB5 RPB5    
    XV - 854385     DNA-directed RNA polymerase core subunit RPB10 RPB10    
    XV - 854157     DNA-directed RNA polymerase II core subunit RPB11 RPB11    
    XV - 854322     DNA-directed RNA polymerase II core subunit RPB2 RPB2    
    XV - 854399     DNA-directed RNA polymerase core subunit RPB8 RPB8    
    X - 853301     DNA-directed RNA polymerase II subunit RPB4 RPB4    
    IV - 851415     DNA-directed RNA polymerase II core subunit RPO21 RPO21    
    IV - 852013     DNA-directed RNA polymerase II subunit RPB7 RPB7    
    XVI - 856317     DNA-directed RNA polymerase core subunit RPB6 RPO26    
    VII - 852810     DNA-directed RNA polymerase II core subunit RPB9 RPB9    
    IX - 854791     DNA-directed RNA polymerase II core subunit RPB3 RPB3    
    VIII - 856547     DNA-directed RNA polymerase core subunit RPB12 RPC10