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Crystal structure of HIV-1 reverse transcriptase (RT) in complex with JANSSEN-R165481
Biology and Chemistry Report
2B5J
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text AIDS, HIV, DRUG DESIGN, REVERSE TRANSCRIPTASE, RT, PROTEIN-INHIBITOR COMPLEX, TRANSFERASE

    Polymeric Molecules

    Chain A
    Description Reverse transcriptase P66 SUBUNIT 
    Fragment RESIDUES 599-1158 
    Mutation C447S 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 64501.7 
    Source Method genetically manipulated  
    Entity Name HIV-1 RT 
    Chain B
    Description Reverse transcriptase P51 SUBUNIT 
    Fragment RESIDUES 599-1028 
    Mutation C447S 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 50282.3 
    Source Method genetically manipulated  
    Entity Name HIV-1 RT 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    3AC  (2E)-3-{3-[(5-ETHYL-3-IODO-6-METHYL-2-OXO-1,2-DIHYDROPYRIDIN-4-YL)OXY]PHENYL}ACRYLONITRILE  C17 H15 I N2 O2   406.22  View 
    MN  MANGANESE (II) ION  Mn   54.94  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A POL_HV1B1 P03366     
    B POL_HV1B1 P03366     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    2.7.7.49        
    2.7.7.7        
    3.1.26.13        
    2.7.7.49        
    2.7.7.7        
    3.1.26.13        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6278   RNA Dependent DNA Replication  A DNA Replication Process That Uses RNA As a Template For RNA Dependent DNA Polymerases (e.g. Reverse Transcriptase) That Synthesize the New Strands. 
    3676   Nucleic Acid Binding  Interacting Selectively and Non Covalently with Any Nucleic Acid. 
    3964   RNA Directed DNA Polymerase Activity  Catalysis of the Reaction: Deoxynucleoside Triphosphate + Dna(n) = Diphosphate + Dna(n+1). Catalyzes RNA Template Directed Extension of the 3' End of a DNA Strand by One Deoxynucleotide At a Time. 
    4523   RNA DNA Hybrid Ribonuclease Activity  Catalysis of the Endonucleolytic Cleavage of RNA in RNA DNA Hybrids to 5' Phosphomonoesters. 
    Chain B
    GO ID   Ontology GO Term Definition
    6278   RNA Dependent DNA Replication  A DNA Replication Process That Uses RNA As a Template For RNA Dependent DNA Polymerases (e.g. Reverse Transcriptase) That Synthesize the New Strands. 
    3964   RNA Directed DNA Polymerase Activity  Catalysis of the Reaction: Deoxynucleoside Triphosphate + Dna(n) = Diphosphate + Dna(n+1). Catalyzes RNA Template Directed Extension of the 3' End of a DNA Strand by One Deoxynucleotide At a Time. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Scientific Name Human immunodeficiency virus 1  
    Genus Lentivirus
    Strain BH10 ISOLATE
    Gene pol
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Description Hiv 1 Clone 12


    Chain A
    Scientific Name Human immunodeficiency virus 1  
    Genus Lentivirus
    Strain BH10 ISOLATE
    Gene pol
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Description Hiv 1 Clone 12