POP-OUT | CLOSE

An Information Portal to 105339 Biological Macromolecular Structures

Ternary complex of the WH2 domain of WAVE with Actin-DNAse I
Biology and Chemistry Report
2A40
  •   Structure Details   Hide

    Structure Keywords

    Keywords STRUCTURAL PROTEIN
    Text WAVE, WH2, WASP, Actin, DNAse I, arp2/3, STRUCTURAL PROTEIN

    Polymeric Molecules

    Chain A,D
    Description Actin, alpha skeletal muscle 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 41876.0 
    Source Method natural source  
    Entity Name Alpha-actin 1 
    Chain B,E
    Description Deoxyribonuclease-1 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 29092.8 
    Source Method natural source  
    Entity Name Deoxyribonuclease I, DNase I 
    Chain C,F
    Description Wiskott-Aldrich syndrome protein family member 2 
    Fragment WH2 domain, residues 433-464 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 3822.3 
    Source Method synthetic  
    Entity Name WASP-family protein member 2, WAVE-2 protein, Verprolin homology domain-containing protein 2 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ATP  ADENOSINE-5'-TRIPHOSPHATE  C10 H16 N5 O13 P3   507.18  View 
    CA  CALCIUM ION  Ca   40.08  View 
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    MG  MAGNESIUM ION  Mg   24.31  View 
    NAG  N-ACETYL-D-GLUCOSAMINE  C8 H15 N O6   221.21  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,D ACTS_RABIT P02568     
    B,E DNAS1_BOVIN A5PK44     
    C,F WASF2_HUMAN B4DZN0     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    B E  3.1.21.1        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,D
    GO ID   Ontology GO Term Definition
    30240   Skeletal Muscle Thin Filament Assembly  The Aggregation Arrangement and Bonding Together of Proteins to Form the Actin Based Thin Filaments of Myofibrils in Skeletal Muscle. 
    48741   Skeletal Muscle Fiber Development  The Process Whose Specific Outcome Is the Progression of the Skeletal Muscle Fiber Over Time From Its Formation to the Mature Structure. Muscle Fibers Are Formed by the Maturation of Myotubes. They Can Be Classed As Slow Intermediate/fast or Fast. 
    1725   Stress Fiber  A Contractile Actin Filament Bundle That Consists of Short Actin Filaments with Alternating Polarity Cross Linked by Alpha Actinin and Possibly Other Actin Bundling Proteins and with Myosin Present in a Periodic Distribution Along the Fiber. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    5856   Cytoskeleton  Any of the Various Filamentous Elements That Form the Internal Framework of Cells and Typically Remain After Treatment of the Cells with Mild Detergent to Remove Membrane Constituents and Soluble Components of the Cytoplasm. the Term Embraces Intermediate Filaments Microfilaments Microtubules the Microtrabecular Lattice and Other Structures Characterized by a Polymeric Filamentous Nature and Long Range Order Within the Cell. the Various Elements of the Cytoskeleton Not Only Serve in the Maintenance of Cellular Shape But Also Have Roles in Other Cellular Functions Including Cellular Movement Cell Division Endocytosis and Movement of Organelles. 
    5865   Striated Muscle Thin Filament  Filaments Formed of Actin and Associated Proteins; Attached to Z Discs At Either End of Sarcomeres in Myofibrils. 
    5884   Actin Filament  A Filamentous Structure Formed of a Two Stranded Helical Polymer of the Protein Actin and Associated Proteins. Actin Filaments Are a Major Component of the Contractile Apparatus of Skeletal Muscle and the Microfilaments of the Cytoskeleton of Eukaryotic Cells. the Filaments Comprising Polymerized Globular Actin Molecules Appear As Flexible Structures with a Diameter of 5 9 Nm. They Are Organized Into a Variety of Linear Bundles Two Dimensional Networks and Three Dimensional Gels. in the Cytoskeleton They Are Most Highly Concentrated in the Cortex of the Cell Just Beneath the Plasma Membrane. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    42802   Identical Protein Binding  Interacting Selectively and Non Covalently with an Identical Protein or Proteins. 
    48306   Calcium Dependent Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules) in the Presence of Calcium. 
    Chain B,E
    GO ID   Ontology GO Term Definition
    737   DNA Catabolic Process Endonucleolytic  The Chemical Reactions and Pathways Resulting in the Breakdown of DNA Involving the Hydrolysis of Internal 3' 5' Phosphodiester Bonds in One or Two Strands of Deoxyribonucleotides. 
    6308   DNA Catabolic Process  The Cellular DNA Metabolic Process Resulting in the Breakdown of DNA Deoxyribonucleic Acid One of the Two Main Types of Nucleic Acid Consisting of a Long Unbranched Macromolecule Formed From One or Two Strands of Linked Deoxyribonucleotides the 3' Phosphate Group of Each Constituent Deoxyribonucleotide Being Joined in 3' 5' Phosphodiester Linkage to the 5' Hydroxyl Group of the Deoxyribose Moiety of the Next One. 
    6915   Apoptotic Process  A Programmed Cell Death Process Which Begins When a Cell Receives an Internal (e.g. DNA Damage) or External Signal (e.g. an Extracellular Death Ligand) and Proceeds Through a Series of Biochemical Events (signaling Pathway Phase) Which Trigger an Execution Phase. the Execution Phase Is the Last Step of an Apoptotic Process and Is Typically Characterized by Rounding Up of the Cell Retraction of Pseudopodes Reduction of Cellular Volume (pyknosis) Chromatin Condensation Nuclear Fragmentation (karyorrhexis) Plasma Membrane Blebbing and Fragmentation of the Cell Into Apoptotic Bodies. When the Execution Phase Is Completed the Cell Has Died. 
    5576   Extracellular Region  The Space External to the Outermost Structure of a Cell. For Cells Without External Protective or External Encapsulating Structures This Refers to Space Outside of the Plasma Membrane. This Term Covers the Host Cell Environment Outside an Intracellular Parasite. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5635   Nuclear Envelope  The Double Lipid Bilayer Enclosing the Nucleus and Separating Its Contents From the Rest of the Cytoplasm; Includes the Intermembrane Space a Gap of Width 20 40 Nm (also Called the Perinuclear Space). 
    3779   Actin Binding  Interacting Selectively and Non Covalently with Monomeric or Multimeric Forms of Actin Including Actin Filaments. 
    4518   Nuclease Activity  Catalysis of the Hydrolysis of Ester Linkages Within Nucleic Acids. 
    4519   Endonuclease Activity  Catalysis of the Hydrolysis of Ester Linkages Within Nucleic Acids by Creating Internal Breaks. 
    4520   Endodeoxyribonuclease Activity  Catalysis of the Hydrolysis of Ester Linkages Within Deoxyribonucleic Acid by Creating Internal Breaks. 
    4530   Deoxyribonuclease I Activity  Catalysis of the Endonucleolytic Cleavage of DNA to 5' Phosphodinucleotide and 5' Phosphooligonucleotide End Products. 
    4536   Deoxyribonuclease Activity  Catalysis of the Hydrolysis of Ester Linkages Within Deoxyribonucleic Acid. 
    16787   Hydrolase Activity  Catalysis of the Hydrolysis of Various Bonds E.g. C O C N C C Phosphoric Anhydride Bonds Etc. Hydrolase Is the Systematic Name For Any Enzyme of EC Class 3. 
    16888   Endodeoxyribonuclease Activity Producing 5' Phosphomonoesters  Catalysis of the Hydrolysis of Ester Linkages Within Deoxyribonucleic Acids by Creating Internal Breaks to Yield 5' Phosphomonoesters. 


     
  •   Gene Details   Hide

    Natural Source

    Chain B,E
    Common Name Cattle
    Scientific Name Bos taurus  
    Genus Bos
    Details Pancreas
    Chain A,D
    Common Name Rabbit
    Scientific Name Oryctolagus cuniculus  
    Genus Oryctolagus
    Details Skeletal Muscle

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    25 - 282217     deoxyribonuclease I DNASE1