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Crystal Structure of mouse CD1d bound to the self ligand phosphatidylcholine
Biology and Chemistry Report
1ZHN
  •   Structure Details   Hide

    Structure Keywords

    Keywords IMMUNE SYSTEM, MEMBRANE PROTEIN
    Text MHC fold; antigen binding domain; Ig fold, IMMUNE SYSTEM, MEMBRANE PROTEIN

    Polymeric Molecules

    Chain A
    Description CD1d1 antigen 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 31131.3 
    Source Method genetically manipulated  
    Entity Name T-cell surface glycoprotein CD1d1 
    Chain B
    Description beta-2-microglobulin 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11704.5 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    FUC  ALPHA-L-FUCOSE  C6 H12 O5   164.16  View 
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    MAN  ALPHA-D-MANNOSE  C6 H12 O6   180.16  View 
    NAG  N-ACETYL-D-GLUCOSAMINE  C8 H15 N O6   221.21  View 
    PC6  7-[(DODECANOYLOXY)METHYL]-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-3,5,8-TRIOXA-4-PHOSPHADOTRIACONTAN-1-AMINIUM 4-OXIDE  C45 H90 N O8 P   804.17  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A CD1D1_MOUSE P11609     
    B B2MG_MOUSE P01887     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    Immune Epitopes (B-cell and T-Cell)

    Immune Epitope Database (IEDB)
    Epitope ID 164030    
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain B
    GO ID   Ontology GO Term Definition
    2376   Immune System Process  Any Process Involved in the Development or Functioning of the Immune System an Organismal System For Calibrated Responses to Potential Internal or Invasive Threats. 
    2474   Antigen Processing and Presentation of Peptide Antigen Via Mhc Class I  The Process in Which an Antigen Presenting Cell Expresses a Peptide Antigen On Its Cell Surface in Association with an Mhc Class I Protein Complex. Class I Here Refers to Classical Class I Molecules. 
    5576   Extracellular Region  The Space External to the Outermost Structure of a Cell. For Cells Without External Protective or External Encapsulating Structures This Refers to Space Outside of the Plasma Membrane. This Term Covers the Host Cell Environment Outside an Intracellular Parasite. 
    42612   Mhc Class I Protein Complex  A Transmembrane Protein Complex Composed of a Mhc Class I Alpha Chain and an Invariant Beta2 Microglobin Chain and with or Without a Bound Peptide Antigen. Class I Here Refers to Classical Class I Molecules. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name House Mouse
    Scientific Name Mus musculus  
    Genus Mus
    Host Common Name Fruit Fly
    Host Scientific Name Drosophila melanogaster  
    Host Genus Drosophila
    Host Cell Line S2 Cells
    Host Vector Prmha 3


    Chain A
    Common Name House Mouse
    Scientific Name Mus musculus  
    Genus Mus
    Host Common Name Fruit Fly
    Host Scientific Name Drosophila melanogaster  
    Host Genus Drosophila
    Host Cell Line S2 Cells
    Host Vector Prmha 3


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    2 2 F1-F3|2 60.55 cM 12010     beta-2 microglobulin B2M