POP-OUT | CLOSE

An Information Portal to 108395 Biological Macromolecular Structures

Crystal structure of 70S ribosome with thrS operator and tRNAs. 30S subunit. The coordinates for the 50S subunit are in the pdb entry 1YL3
Biology and Chemistry Report
1YL4
  •   Structure Details   Hide

    Structure Keywords

    Keywords RIBOSOME
    Text ribosome, mRNA, translational operator

    Polymeric Molecules

    Chain A
    Description 16S rRNA 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 493959.0 
    Source Method natural source  
    Chain K
    Description 30S ribosomal protein S8 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 15868.7 
    Source Method natural source  
    Chain L
    Description 30S ribosomal protein S9 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14429.8 
    Source Method natural source  
    Chain M
    Description 30S ribosomal protein S10 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11955.1 
    Source Method natural source  
    Chain N
    Description 30S ribosomal protein S11 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13738.0 
    Source Method natural source  
    Chain O
    Description 30S ribosomal protein S12 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14920.9 
    Source Method natural source  
    Chain P
    Description 30S ribosomal protein S13 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14339.0 
    Source Method natural source  
    Chain Q
    Description 30S ribosomal protein S14 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 7158.8 
    Source Method natural source  
    Chain R
    Description 30S ribosomal protein S15 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10578.5 
    Source Method natural source  
    Chain S
    Description 30S ribosomal protein S16 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10410.1 
    Source Method natural source  
    Chain T
    Description 30S ribosomal protein S17 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 12324.8 
    Source Method natural source  
    Chain B,C
    Description tRNA Phe (unmodified bases) 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 24518.7 
    Source Method natural source  
    Chain U
    Description 30S ribosomal protein S18 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10244.4 
    Source Method natural source  
    Chain V
    Description 30S ribosomal protein S19 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10605.6 
    Source Method natural source  
    Chain W
    Description 30S ribosomal protein S20 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11722.2 
    Source Method natural source  
    Chain X
    Description 30S ribosomal protein Thx 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 3350.1 
    Source Method natural source  
    Chain 1
    Description thrS mRNA operator 
    Fragment nucleotides -59 to +19 of thrS mRNA (here renumbered 1 to 77) 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 24992.9 
    Source Method synthetic  
    Chain E
    Description 30S ribosomal protein S2 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 29317.9 
    Source Method natural source  
    Chain F
    Description 30S ribosomal protein S3 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 26751.3 
    Source Method natural source  
    Chain G
    Description 30S ribosomal protein S4 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 24373.6 
    Source Method natural source  
    Chain H
    Description 30S ribosomal protein S5 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17583.6 
    Source Method natural source  
    Chain I
    Description 30S ribosomal protein S6 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11988.9 
    Source Method natural source  
    Entity Name TS9 
    Chain J
    Description 30S ribosomal protein S7 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 18051.1 
    Source Method natural source  

    Entity Keywords

    Entity Id EC Number Fragment Mutation Text
    23  n/a  n/a  n/a  MONOMER 
    22  n/a  n/a  n/a  MONOMER 
    21  n/a  n/a  n/a  MONOMER 
    20  n/a  n/a  n/a  MONOMER 
    19  n/a  n/a  n/a  MONOMER 
    18  n/a  n/a  n/a  MONOMER 
    17  n/a  n/a  n/a  MONOMER 
    16  n/a  n/a  n/a  MONOMER 
    15  n/a  n/a  n/a  MONOMER 
    14  n/a  n/a  n/a  MONOMER 
    13  n/a  n/a  n/a  MONOMER 
    n/a  n/a  n/a  MONOMER 
    n/a  n/a  n/a  MONOMER 
    n/a  n/a  n/a  MONOMER 
    n/a  n/a  n/a  MONOMER 
    n/a  n/a  n/a  MONOMER 
    n/a  n/a  n/a  MONOMER 
    n/a  n/a  n/a  MONOMER 
    n/a  n/a  n/a  MONOMER 
    n/a  n/a  n/a  MONOMER 
    10  n/a  n/a  n/a  MONOMER 
    11  n/a  n/a  n/a  MONOMER 
    12  n/a  n/a  n/a  MONOMER 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)

     
  •   Gene Details   Hide

    Natural Source

    Chain X
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain W
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain V
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain U
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain T
    Scientific Name Thermus thermophilus hb8  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8 / ATCC 27634 / DSM 579
    Chain S
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain R
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain Q
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain P
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain O
    Scientific Name Thermus thermophilus hb8  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8 / ATCC 27634 / DSM 579
    Chain A
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain B,C
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain E
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain F
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain G
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain H
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain I
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain J
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain K
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain L
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain M
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8
    Chain N
    Scientific Name Thermus thermophilus  
    Genus Thermus
    Species Thermus Thermophilus
    Strain HB8

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    - - 3169811     30S ribosomal protein S8 RPSH    
    - - 3167932     30S ribosomal protein S10 RPSJ    
    - - 3168024     30S ribosomal protein S11 TTHA1666    
    - - 3167962     30S ribosomal protein S13 RPSM    
    - - 3169802     30S ribosomal protein S14 RPSN    
    - - 3169463     30S ribosomal protein S15 RPSO    
    - - 3170114     30S ribosomal protein S16 RPSP    
    - - 3169831     30S ribosomal protein S17 RPSQ    
    - - 3169870     30S ribosomal protein S18 RPSR    
    - - 3167860     30S ribosomal protein S19 RPSS    
    - - 3168745     30S ribosomal protein Thx TTHA1396    
    - - 3170121     30S ribosomal protein S2 RPSB    
    - - 3169827     30S ribosomal protein S5 RPSE    
    - - 3168355     30S ribosomal protein S6 RPSF