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Crystal Structure of Pim-1 bound to LY294002
Biology and Chemistry Report
1YI3
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text Protein kinase, PI3K, TRANSFERASE

    Polymeric Molecules

    Chain A
    Description Proto-oncogene serine/threonine-protein kinase Pim-1 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 31674.2 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    LY2  2-MORPHOLIN-4-YL-7-PHENYL-4H-CHROMEN-4-ONE  C19 H17 N O3   307.34  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A PIM1_HUMAN P11309     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    2.7.11.1        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4674   Protein Serine/threonine Kinase Activity  Catalysis of the Reactions: ATP + Protein Serine = Adp + Protein Serine Phosphate and ATP + Protein Threonine = Adp + Protein Threonine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene pim1
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Strain Bl21/de3 Plyss
    Host Vector Type Plasmid
    Host Plasmid Name pBEV1


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    6 6p21.2 5292     Pim-1 proto-oncogene, serine/threonine kinase PIM1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs35760989 LS-SNP   dbSNP   A 124 E - > Q Bend 70% (Exposed) 6 37139030
    rs200523275 LS-SNP   dbSNP   A 135 E - > K Helix 74% (Exposed) 6 37139063
    rs33989191 LS-SNP   dbSNP   A 142 E - > D Helix 35% (Intermediate) 6 37139086
    rs141143854 LS-SNP   dbSNP   A 157 H - > Y Helix 24% (Intermediate) 6 37139129 CME
    rs200536541 LS-SNP   dbSNP   A 157 H - > P Helix 24% (Intermediate) 6 37139130 CME
    rs200495767 LS-SNP   dbSNP   A 184 L - > V Beta Ladder 2% (Buried) 6 37139210
    rs137884665 LS-SNP   dbSNP   A 197 V - > F Coil 26% (Intermediate) 6 37139249
    rs199791472 LS-SNP   dbSNP   A 206 V - > E 3/10 Helix 26% (Intermediate) 6 37140781
    rs141695323 LS-SNP   dbSNP   A 282 E - > V Helix 70% (Exposed) 6 37141770
    rs9349029 LS-SNP   dbSNP   A 300 A - > V Helix 0% (Buried) 6 37141824
    rs199624946 LS-SNP   dbSNP   A 302 I - > T Helix 55% (Exposed) 6 37141830