POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

P53-53BP2 COMPLEX
Biology and Chemistry Report
1YCS
  •   Structure Details   Hide

    Structure Keywords

    Keywords COMPLEX (ANTI-ONCOGENE/ANKYRIN REPEATS)
    Text ANKYRIN REPEATS, SH3, P53, TUMOR SUPPRESSOR, MULTIGENE FAMILY, NUCLEAR PROTEIN, PHOSPHORYLATION, DISEASE MUTATION, COMPLEX (ANTI-ONCOGENE-ANKYRIN REPEATS), COMPLEX (ANTI-ONCOGENE-ANKYRIN REPEATS) complex

    Polymeric Molecules

    Chain A
    Description P53 
    Fragment RESIDUES 97 - 287 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 22448.7 
    Source Method genetically manipulated  
    Chain B
    Description 53BP2 
    Fragment RESIDUES 327 - 519 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 26943.7 
    Source Method genetically manipulated  
    Entity Name P53BP2 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A P53_HUMAN P04637     
    B ASPP2_HUMAN B4DG66     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    6915   Apoptotic Process  A Programmed Cell Death Process Which Begins When a Cell Receives an Internal (e.g. DNA Damage) or External Signal (e.g. an Extracellular Death Ligand) and Proceeds Through a Series of Biochemical Events (signaling Pathway Phase) Which Trigger an Execution Phase. the Execution Phase Is the Last Step of an Apoptotic Process and Is Typically Characterized by Rounding Up of the Cell Retraction of Pseudopodes Reduction of Cellular Volume (pyknosis) Chromatin Condensation Nuclear Fragmentation (karyorrhexis) Plasma Membrane Blebbing and Fragmentation of the Cell Into Apoptotic Bodies. When the Execution Phase Is Completed the Cell Has Died. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3700   Sequence Specific DNA Binding Transcription Factor Activity  Interacting Selectively and Non Covalently with a Specific DNA Sequence in Order to Modulate Transcription. the Transcription Factor May or May Not Also Interact Selectively with a Protein or Macromolecular Complex. 
    44212   Transcription Regulatory Region DNA Binding  Interacting Selectively and Non Covalently with a DNA Region That Regulates the Transcription of a Region of DNA Which May Be a Gene Cistron or Operon. Binding May Occur As a Sequence Specific Interaction or As an Interaction Observed Only Once a Factor Has Been Recruited to the DNA by Other Factors. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Cell Line Bl21
    Gene residues 291-529
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Strain Bl21 (d3)
    Host Gene Residues 291 529
    Host Plasmid Name PGEX-3X, GST FUSION
    Description The Fragment Used in the Crystallization (residues 291 519) Was Produced by the Cleavage of Factor Xa From Gst Fusion Protein


    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Cell Line Bl21
    Gene residues 291-529
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Strain Bl21 (d3)
    Host Gene Residues 94 292
    Host Plasmid Name PET3D


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q41 7159     tumor protein p53 binding protein 2 TP53BP2    
    17 17p13.1 7157     tumor protein p53 TP53    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs11540654 LS-SNP   dbSNP   A 110 R - > LP Beta Ladder 35% (Intermediate) 17 7579358
    rs137852792 LS-SNP   dbSNP   A 129 A - > V Turn 86% (Exposed) 17 7578544
    rs28934873 LS-SNP   dbSNP   A 133 M - > T Beta Ladder 1% (Buried) 17 7578532
    rs28934875 LS-SNP   dbSNP   A 138 A - > P Turn 42% (Exposed) 17 7578518
    rs28934874 LS-SNP   dbSNP   A 151 P - > ST Coil 6% (Buried) 17 7578479
    rs137852789 LS-SNP   dbSNP   A 154 G - > S Turn 52% (Exposed) 17 7578470
    rs121912654 LS-SNP   dbSNP   A 157 V - > F Beta Ladder 1% (Buried) 17 7578461
    rs193920817 LS-SNP   dbSNP   A 161 A - > T Beta Ladder 10% (Intermediate) 17 7578449
    rs148924904 LS-SNP   dbSNP   A 163 Y - > C Beta Ladder 1% (Buried) 17 7578442
    rs138729528 LS-SNP   dbSNP   A 175 R - > G Coil 1% (Buried) 17 7578407
    rs28934578 LS-SNP   dbSNP   A 175 R - > H Coil 1% (Buried) 17 7578406
    rs147002414 LS-SNP   dbSNP   A 177 P - > S Helix 40% (Exposed) 17 7578401
    rs72661117 LS-SNP   dbSNP   A 184 D - > N Coil 29% (Intermediate) 17 7578380
    rs150607408 LS-SNP   dbSNP   A 185 S - > N Coil 65% (Exposed) 17 7578376
    rs121912665 LS-SNP   dbSNP   A 189 A - > V Bend 8% (Buried) 17 7578283
    rs35163653 LS-SNP   dbSNP   A 217 V - > M Beta Ladder 0% (Buried) 17 7578200
    rs121912666 LS-SNP   dbSNP   A 220 Y - > S Coil 12% (Intermediate) 17 7578190
    rs146340390 LS-SNP   dbSNP   A 222 P - > L Coil 55% (Exposed) 17 7578184
    rs138983188 LS-SNP   dbSNP   A 223 P - > H Coil 34% (Intermediate) 17 7578181
    rs144340710 LS-SNP   dbSNP   A 235 N - > S Beta Ladder 13% (Intermediate) 17 7577577
    rs193920789 LS-SNP   dbSNP   A 238 C - > W Bend 1% (Buried) 17 7577567 ZN
    rs28934573 LS-SNP   dbSNP   A 241 S - > F Turn 12% (Intermediate) 17 7577559
    rs121912655 LS-SNP   dbSNP   A 242 C - > Y Coil 3% (Buried) 17 7577556 ZN
    rs28934572 LS-SNP   dbSNP   A 244 G - > D Turn 58% (Exposed) 17 7577550
    rs121912656 LS-SNP   dbSNP   A 245 G - > D Turn 6% (Buried) 17 7577547
    rs28934575 LS-SNP   dbSNP   A 245 G - > CS Turn 6% (Buried) 17 7577548
    rs11540652 LS-SNP   dbSNP   A 248 R - > Q Turn 10% (Intermediate) 17 7577538
    rs121912651 LS-SNP   dbSNP   A 248 R - > W Turn 10% (Intermediate) 17 7577539
    rs28934571 LS-SNP   dbSNP   A 249 R - > S Coil 1% (Buried) 17 7577534
    rs121912653 LS-SNP   dbSNP   A 252 L - > P Beta Ladder 7% (Buried) 17 7577526
    rs28934577 LS-SNP   dbSNP   A 257 L - > Q Beta Ladder 1% (Buried) 17 7577511
    rs121912652 LS-SNP   dbSNP   A 258 E - > K Beta Ladder 9% (Buried) 17 7577509
    rs200579969 LS-SNP   dbSNP   A 262 G - > S Bend 45% (Exposed) 17 7577154
    rs72661119 LS-SNP   dbSNP   A 263 N - > D Coil 60% (Exposed) 17 7577151
    rs193920774 LS-SNP   dbSNP   A 266 G - > E Beta Ladder 0% (Buried) 17 7577141
    rs55832599 LS-SNP   dbSNP   A 267 R - > W Beta Ladder 19% (Intermediate) 17 7577139
    rs121912657 LS-SNP   dbSNP   A 272 V - > L Beta Ladder 1% (Buried) 17 7577124
    rs28934576 LS-SNP   dbSNP   A 273 R - > H Beta Ladder 16% (Intermediate) 17 7577120
    rs121913343 LS-SNP   dbSNP   A 273 R - > C Beta Ladder 16% (Intermediate) 17 7577121
    rs17849781 LS-SNP   dbSNP   A 278 P - > A Helix 0% (Buried) 17 7577106
    rs193920853 LS-SNP   dbSNP   A 280 R - > I Helix 31% (Intermediate) 17 7577099
    rs121912660 LS-SNP   dbSNP   A 280 R - > T Helix 31% (Intermediate) 17 7577099
    rs28934574 LS-SNP   dbSNP   A 282 R - > W Helix 15% (Intermediate) 17 7577094
    rs149633775 LS-SNP   dbSNP   A 283 R - > C Helix 60% (Exposed) 17 7577091
    rs121912667 LS-SNP   dbSNP   A 285 E - > V Helix 38% (Exposed) 17 7577084
    rs112431538 LS-SNP   dbSNP   A 285 E - > K Helix 38% (Exposed) 17 7577085
    rs184765949 LS-SNP   dbSNP   B 429 A - > T Coil 6% (Buried) 1 223976767
    rs200833789 LS-SNP   dbSNP   B 453 M - > T Helix 64% (Exposed) 1 223972001
    rs77037265 LS-SNP   dbSNP   B 461 I - > T 3/10 Helix 7% (Buried) 1 223971977
    rs201272472 LS-SNP   dbSNP   B 463 A - > V Beta Ladder 0% (Buried) 1 223971971
    rs199555395 LS-SNP   dbSNP   B 481 D - > N Bend 45% (Exposed) 1 223971918
    rs199696500 LS-SNP   dbSNP   B 495 E - > K Coil 12% (Intermediate) 1 223971876
    rs199572474 LS-SNP   dbSNP   B 500 R - > C Beta Ladder 29% (Intermediate) 1 223971861