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Crystal structure of hPim-1 kinase in complex with AMP-PNP at 2.1 A Resolution
Biology and Chemistry Report
1XR1
  •   Structure Details   Hide

    Structure Keywords

    Keywords transferase
    Text protein kinase fold, transferase

    Polymeric Molecules

    Chain A
    Description Proto-oncogene serine/threonine-protein kinase Pim-1 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 34252.2 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ANP  PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER  C10 H17 N6 O12 P3   506.20  View 
    MG  MAGNESIUM ION  Mg   24.31  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A PIM1_HUMAN P11309     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    2.7.11.1        
     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene pim1
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    6 6p21.2 5292     Pim-1 proto-oncogene, serine/threonine kinase PIM1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs149210226 LS-SNP   dbSNP   A 82 N - > D Turn 69% (Exposed) 6 37138904
    rs35760989 LS-SNP   dbSNP   A 124 E - > Q Bend 63% (Exposed) 6 37139030
    rs200523275 LS-SNP   dbSNP   A 135 E - > K Helix 75% (Exposed) 6 37139063
    rs33989191 LS-SNP   dbSNP   A 142 E - > D Helix 36% (Intermediate) 6 37139086
    rs141143854 LS-SNP   dbSNP   A 157 H - > Y Helix 14% (Intermediate) 6 37139129
    rs200536541 LS-SNP   dbSNP   A 157 H - > P Helix 14% (Intermediate) 6 37139130
    rs200495767 LS-SNP   dbSNP   A 184 L - > V Beta Ladder 3% (Buried) 6 37139210
    rs137884665 LS-SNP   dbSNP   A 197 V - > F Coil 44% (Exposed) 6 37139249
    rs199791472 LS-SNP   dbSNP   A 206 V - > E 3/10 Helix 30% (Intermediate) 6 37140781
    rs141695323 LS-SNP   dbSNP   A 282 E - > V Helix 73% (Exposed) 6 37141770
    rs9349029 LS-SNP   dbSNP   A 300 A - > V Helix 0% (Buried) 6 37141824
    rs199624946 LS-SNP   dbSNP   A 302 I - > T Helix 51% (Exposed) 6 37141830