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EGFR kinase domain complexed with a quinazoline inhibitor- GW572016
Biology and Chemistry Report
1XKK
  •   Structure Details   Hide

    Structure Keywords

    Keywords Transferase
    Text EGFR, epidermal growth factor receptor, kinase, Transferase

    Polymeric Molecules

    Chain A
    Description Epidermal growth factor receptor 
    Fragment EGFR kinase domain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 40324.8 
    Source Method genetically manipulated  
    Entity Name Receptor protein-tyrosine kinase ErbB-1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    FMM  N-{3-CHLORO-4-[(3-FLUOROBENZYL)OXY]PHENYL}-6-[5-({[2-(METHYLSULFONYL)ETHYL]AMINO}METHYL)-2-FURYL]-4-QUINAZOLINAMINE  C29 H26 Cl F N4 O4 S   581.06  View 
    PO4  PHOSPHATE ION  O4 P   94.97  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A EGFR_HUMAN O00688     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    2.7.10.1        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4713   Protein Tyrosine Kinase Activity  Catalysis of the Reaction: ATP + a Protein Tyrosine = Adp + Protein Tyrosine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Gene egfr, erbb1
    Host Common Name Fall Armyworm
    Host Scientific Name Spodoptera frugiperda  
    Host Genus Spodoptera
    Host Vector Pfastbac
    Host Vector Type Baculovirus


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    7 7p12 1956     epidermal growth factor receptor EGFR    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs28929495 LS-SNP   dbSNP   A 719 G - > CS Beta Ladder 37% (Exposed) 7 55241707 FMM
    rs121913428 LS-SNP   dbSNP   A 719 G - > AD Beta Ladder 37% (Exposed) 7 55241708 FMM
    rs138240620 LS-SNP   dbSNP   A 727 Y - > C Beta Ladder 24% (Intermediate) 7 55241732
    rs121913434 LS-SNP   dbSNP   A 730 L - > F Beta Ladder 29% (Intermediate) 7 55242418
    rs121913446 LS-SNP   dbSNP   A 733 P - > L Coil 43% (Exposed) 7 55242428
    rs121913466 LS-SNP   dbSNP   A 742 V - > A Beta Ladder 0% (Buried) 7 55242455
    rs121913433 LS-SNP   dbSNP   A 745 K - > R Beta Ladder 10% (Intermediate) 7 55242464 FMM
    rs121913427 LS-SNP   dbSNP   A 746 E - > K Beta Ladder 24% (Intermediate) 7 55242466
    rs121913418 LS-SNP   dbSNP   A 761 D - > NY Helix 67% (Exposed) 7 55242511
    rs121913465 LS-SNP   dbSNP   A 768 S - > I Helix 38% (Exposed) 7 55249005
    rs147149347 LS-SNP   dbSNP   A 769 V - > M Coil 3% (Buried) 7 55249007
    rs121913432 LS-SNP   dbSNP   A 773 H - > R Turn 10% (Intermediate) 7 55249020
    rs121434569 LS-SNP   dbSNP   A 790 T - > M Beta Ladder 18% (Intermediate) 7 55249071 FMM
    rs121913431 LS-SNP   dbSNP   A 810 G - > D Coil 5% (Buried) 7 55249131
    rs121913230 LS-SNP   dbSNP   A 810 G - > S Coil 5% (Buried) 7 55249130
    rs150749913 LS-SNP   dbSNP   A 827 Y - > F Helix 13% (Intermediate) 7 55259422
    rs150036236 LS-SNP   dbSNP   A 831 R - > H Turn 50% (Exposed) 7 55259434
    rs146121458 LS-SNP   dbSNP   A 836 R - > H Bend 10% (Intermediate) 7 55259449 PO4
    rs143884981 LS-SNP   dbSNP   A 840 A - > T 3/10 Helix 0% (Buried) 7 55259460
    rs146795390 LS-SNP   dbSNP   A 843 V - > I Beta Ladder 0% (Buried) 7 55259469
    rs148934350 LS-SNP   dbSNP   A 848 P - > L Turn 20% (Intermediate) 7 55259485
    rs121913443 LS-SNP   dbSNP   A 858 L - > M Helix 1% (Buried) 7 55259514 FMM
    rs121434568 LS-SNP   dbSNP   A 858 L - > R Helix 1% (Buried) 7 55259515 FMM
    rs121913444 LS-SNP   dbSNP   A 861 L - > Q Helix 27% (Intermediate) 7 55259524
    rs151064287 LS-SNP   dbSNP   A 892 T - > I Coil 38% (Exposed) 7 55260508
    rs201830126 LS-SNP   dbSNP   A 955 A - > T 3/10 Helix 20% (Intermediate) 7 55268023
    rs104886026 LS-SNP   dbSNP   A 956 D - > N 3/10 Helix 82% (Exposed) 7 55268026
    rs144496976 LS-SNP   dbSNP   A 962 R - > H Helix 20% (Intermediate) 7 55268045
    rs17337451 LS-SNP   dbSNP   A 962 R - > CG Helix 20% (Intermediate) 7 55268044
    rs1140476 LS-SNP   dbSNP   A 977 R - > C Helix 62% (Exposed) 7 55268089
    rs149248025 LS-SNP   dbSNP   A 999 R - > H Helix 12% (Intermediate) 7 55268930